View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1613_high_5 (Length: 412)
Name: NF1613_high_5
Description: NF1613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1613_high_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 26 - 412
Target Start/End: Complemental strand, 36636145 - 36635759
Alignment:
| Q |
26 |
ttcatctccgttcttctctcgttttcttcactgccacgcaatggcaagaaccgcctctcaatcatctcaatctgcatcttccggtgccacgacacgacca |
125 |
Q |
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| T |
36636145 |
ttcatctccgttcttctctcgttttcttcactgccacgcaatggcaagaaccgcctctcaatcatctcaatctgcatcttccggtgccacgacacgacca |
36636046 |
T |
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| Q |
126 |
ggtgtcatggcaccacgcggctccgctgccgctacagccggtatgcgtcgtcgccgcccaacaggtggaaacactaccagctccacctctgccgcaggaa |
225 |
Q |
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| T |
36636045 |
ggtgtcatggcaccacgcggctccgctgccgctacagccggtatgcgtcgtcgccgtccaacaggtggaaacactaccagctccacctctgccgcaggaa |
36635946 |
T |
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| Q |
226 |
gctccagcggagggaacaacatgctgcgattctacactgacgatgcacctggtttgaagatttctccgacggtggttctcgtgatgagtctcggcttcat |
325 |
Q |
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| T |
36635945 |
gctccagcggagggaacaacatgctgcgattctacaccgacgatgcacctggtttgaagatttctccgacggtggttctcgtgatgagtctcggcttcat |
36635846 |
T |
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| Q |
326 |
tggtttcgtcaccatgctccatgtttttggcaaactctaccgttaccaatctggtcctggtgctggtgcaggcgccggtgcttgatt |
412 |
Q |
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| T |
36635845 |
tggtttcgtcaccatgctccatgtttttggcaaactctaccgttatcaatctggtcctggtgctggtgcaggcgccggtgcttgatt |
36635759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 231 - 338
Target Start/End: Original strand, 39998468 - 39998575
Alignment:
| Q |
231 |
agcggagggaacaacatgctgcgattctacactgacgatgcacctggtttgaagatttctccgacggtggttctcgtgatgagtctcggcttcattggtt |
330 |
Q |
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| T |
39998468 |
agcggaggaagcaacatgctgagattctacactgatgatgcacctggtttgaagatttctcctacggttgttttggttatgagtctctgcttcattggtt |
39998567 |
T |
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| Q |
331 |
tcgtcacc |
338 |
Q |
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|||||||| |
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| T |
39998568 |
tcgtcacc |
39998575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 39998381 - 39998424
Alignment:
| Q |
138 |
ccacgcggctccgctgccgctacagccggtatgcgtcgtcgccg |
181 |
Q |
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| T |
39998381 |
ccacgcggctccgctgccgccactgccggcatgcgtcgtcgccg |
39998424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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