View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1613_high_6 (Length: 396)
Name: NF1613_high_6
Description: NF1613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1613_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 40425794 - 40425429
Alignment:
Q |
18 |
tttcttgatagtttctcctatagtgtatcttggtcttcctttgcctctagcaactgagctacgctacatctgatctactctccttactttggaatataca |
117 |
Q |
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T |
40425794 |
tttcttgatagtttctcctatagtgtttcttggtcttcctttgcctctagcaactgagctacactacatctgatctactctccttactttggaatataca |
40425695 |
T |
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Q |
118 |
agtctccttcacacatgcccaaaccccctaaatctagattcaaccatctttcctataaaagatgctatcccaactacctctctaatataataattcctaa |
217 |
Q |
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T |
40425694 |
ggtctccttcacacatgcccaaaccccctaaatctagatccaaccatctttcctataaaagatgctatcccaactacctctctaatataataattcctaa |
40425595 |
T |
|
Q |
218 |
gcatactctatctagtatcccacacatctagcatagcattctcatcttttctacactaactttactccggtgttgacattttaccacccaccactccatc |
317 |
Q |
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T |
40425594 |
gcatactctatctagtatcccacacatctagcatagcattctcatcttttctacactaactttactccggtgttgacattttaccacccaccactccatc |
40425495 |
T |
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Q |
318 |
acgtacaacattgttggtcttatagttgtacggtaaaacttcccctttaccttgagcggtaccttc |
383 |
Q |
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T |
40425494 |
acgtacaacattgttggtcttatagttgtacggtaaaacttcccctttaccttgagcggtaccttc |
40425429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 8807659 - 8807595
Alignment:
Q |
100 |
cttactttggaatatacaagtctccttcacacatgcccaaaccccctaaatctagattcaaccat |
164 |
Q |
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T |
8807659 |
cttactatggaatctacaagtttgctccacacatgcccaaagcacctaagtcgagattcaaccat |
8807595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 5057535 - 5057475
Alignment:
Q |
296 |
ttttaccacccaccactccatcacgtacaacattgttggtcttatagttgtacggtaaaac |
356 |
Q |
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T |
5057535 |
ttttaccgcgcaacactccatcctgtacaacattgttggtcttacagttgtacgataaaac |
5057475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 32408434 - 32408499
Alignment:
Q |
119 |
gtctccttcacacatgcccaaaccccctaaatctagattcaaccatctttcctataaaagatgcta |
184 |
Q |
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T |
32408434 |
gtctccttcacacatgcccaaaccttctaagtagagattcaacaatattttctataaaaggtgcta |
32408499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 7633541 - 7633592
Alignment:
Q |
18 |
tttcttgatagtttctcctatagtgtatcttggtcttcctttgcctctagcaa |
70 |
Q |
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T |
7633541 |
tttcttgatagtttctcctgtag-gtttcttggttttcctttgcctctagcaa |
7633592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 43260508 - 43260444
Alignment:
Q |
84 |
catctgatctactctccttactttggaatatacaagtctccttcacacatgcccaaaccccctaa |
148 |
Q |
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T |
43260508 |
catctgatctactctccttactatagaatctacaagtcttttcttcacatgcccaaaccacctaa |
43260444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 54485637 - 54485558
Alignment:
Q |
89 |
gatctactctccttactttggaatatacaagtctccttcacacatgcccaaaccccctaaatctagattcaaccatcttt |
168 |
Q |
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T |
54485637 |
gatctactctccttcctatggaatcgataggtctcctccacacatgctcaaaccacttaaattgagattcaaccatcttt |
54485558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 31261054 - 31261103
Alignment:
Q |
18 |
tttcttgatagtttctcctatagtgtatcttggtcttcctttgcctctag |
67 |
Q |
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T |
31261054 |
tttcttgatagtttctcttatagtttttctaggtcttcctctgcctctag |
31261103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 5335976 - 5335916
Alignment:
Q |
132 |
atgcccaaaccccctaaatctagattcaaccatctttcctataaaagatgctatcccaact |
192 |
Q |
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T |
5335976 |
atgcccaaaccacctaagtctagtttcgaccatctttcctactatagatgctaccccaact |
5335916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 192
Target Start/End: Complemental strand, 46990007 - 46989899
Alignment:
Q |
84 |
catctgatctactctccttactttggaatatacaagtctccttcacacatgcccaaaccccctaaatctagattcaaccatctttcctataaaagatgct |
183 |
Q |
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T |
46990007 |
catctgatctactatctttactgcgaaatctataggtctcctccacacatgcccaaaccacctaagatgaaattcaaccatcttttctacaataggtgct |
46989908 |
T |
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Q |
184 |
atcccaact |
192 |
Q |
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T |
46989907 |
accccaact |
46989899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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