View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1613_low_10 (Length: 368)
Name: NF1613_low_10
Description: NF1613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1613_low_10 |
 | |
|
| [»] chr5 (18 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
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|
Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 18)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 11049263 - 11048909
Alignment:
| Q |
14 |
caaaggtagaaaacatgcaacacaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatc |
113 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11049263 |
caaaggtagaaaacatgcaacaaaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcatttattataattatc |
11049164 |
T |
|
| Q |
114 |
acctggatgnnnnnnngaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatg |
213 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
11049163 |
acctggatgaaaaaaagaaaccaaaaaccatcttttgattcaccaacaattgatcaactagataaagtttcataccaagatttacatcaaggaaccgatg |
11049064 |
T |
|
| Q |
214 |
gattctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggtaatgttgttgctgtgaaagtcttcaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11049063 |
gattctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggtaatgttgttgctgtgaaagtcttcaa |
11048964 |
T |
|
| Q |
314 |
cctccaaaacaatggagctagcaagagtttcattgttgaatgtaatgcactcaaa |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11048963 |
cctccaaaacaatggagctagcaagagtttcattgttgaatgtaatgcactcaaa |
11048909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 10217353 - 10217001
Alignment:
| Q |
18 |
ggtagaaaacatgcaacacaccataatttcaggttggtatcagtga--tagttagtgtggtttcttttcttatcatactttcattcattataattatcac |
115 |
Q |
| |
|
||||| |||||||||||| || |||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10217353 |
ggtaggaaacatgcaacaaactataattccaggttgatatcagtgagatagttagtgtggtttcttttcttatcatactttcatttattataattatcac |
10217254 |
T |
|
| Q |
116 |
ctggatgnnnnnnngaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatgga |
215 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
10217253 |
ttggatgaaaaaaagaaaccaaaatccatcttttgattcaccaacaatcgatcaactagctaaagtttcataccaagacttacatcaaggaactgatggg |
10217154 |
T |
|
| Q |
216 |
ttctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggtaatgttgttgctgtgaaagtcttcaacc |
315 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||| |||| |||||| || || ||||||||||| |||| |||||||||||||||||| ||| | |||| |
|
|
| T |
10217153 |
ttctcggataaaaacttgattggatcaggaagttttggttgtgtgtatagcgggaatcttgtgtcagaagttaatgttgttgctgtgaaggtcctaaacc |
10217054 |
T |
|
| Q |
316 |
tccaaaacaatggagctagcaagagtttcattgttgaatgtaatgcactcaaa |
368 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10217053 |
tccaaaagaatggagctagcaagagttttattgttgaatgtaatgcactcaaa |
10217001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 24 - 368
Target Start/End: Complemental strand, 10741295 - 10740951
Alignment:
| Q |
24 |
aaacatgcaacacaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacctggatgn |
123 |
Q |
| |
|
|||||||||| | | |||||||||| |||| || ||||||||||||| ||| |||||||||| ||||||||||||| |||| |||| ||||||| |
|
|
| T |
10741295 |
aaacatgcaaaaaaacataatttcaagttgatagcagtgatagttagcgtgatttcttttctgctcatactttcatttgttatttctatctgctggatga |
10741196 |
T |
|
| Q |
124 |
nnnnnngaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggattctcaga |
223 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| ||||| | |||||||||||| |||||||| |
|
|
| T |
10741195 |
ggaagagaaaccaaaacccatcctttgattcaccaactattgatcaactagctaaggtttcatatcaagacttacaccgaggaaccgatgggttctcaga |
10741096 |
T |
|
| Q |
224 |
taaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggtaatgttgttgctgtgaaagtcttcaacctccaaaac |
323 |
Q |
| |
|
| ||||||||| ||||||||| |||| ||||||||||||| ||||||||||||| | |||| ||||||||||| || || ||||| |||||| |||| |
|
|
| T |
10741095 |
aagaaacttgatcggatcaggaagttttggttctgtgtacaaaggaaatcttgtgacagaagacaatgttgttgccgtaaaggtcttgaacctcaaaaag |
10740996 |
T |
|
| Q |
324 |
aatggagctagcaagagtttcattgttgaatgtaatgcactcaaa |
368 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10740995 |
aagggagctcacaagagtttcattgttgaatgtaatgcactcaaa |
10740951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 24 - 364
Target Start/End: Complemental strand, 10763729 - 10763389
Alignment:
| Q |
24 |
aaacatgcaacacaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacctggatgn |
123 |
Q |
| |
|
|||||||||| || || || ||||||||| || ||||||||||||| ||||||||||||||| ||||||||||||| || |||| |||| ||| || |
|
|
| T |
10763729 |
aaacatgcaaaacgacacaagttcaggttgatagcagtgatagttagcgtggtttcttttcttctcatactttcatttatcataactatctactgcataa |
10763630 |
T |
|
| Q |
124 |
nnnnnngaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggattctcaga |
223 |
Q |
| |
|
|||| | ||| | |||||||||||||||||||||||| ||||||| ||| |||||||||||||| |||| |||||||| ||||| ||||| || |
|
|
| T |
10763629 |
ggaaaagaaatccaaagcgatcttttgattcaccaacaattgagcaactagataaggtttcataccaagagttactccaaggaacagatgggttctcgga |
10763530 |
T |
|
| Q |
224 |
taaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggtaatgttgttgctgtgaaagtcttcaacctccaaaac |
323 |
Q |
| |
|
||||||| |||| ||||||||| ||| ||| |||||||||||||||||||||||| |||| ||| |||||||| | ||||||||||||||||||||| |
|
|
| T |
10763529 |
taaaaacctgatcggatcaggaagttctggtgatgtgtacagaggaaatcttgtgtcagaagacaatattgttgctataaaagtcttcaacctccaaaac |
10763430 |
T |
|
| Q |
324 |
aatggagctagcaagagtttcattgttgaatgtaatgcact |
364 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10763429 |
aatggagctcacaagagtttcattgttgaatgtaatgcact |
10763389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 39 - 364
Target Start/End: Complemental strand, 10717521 - 10717196
Alignment:
| Q |
39 |
cataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacctggatgnnnnnnngaaaccaaa |
138 |
Q |
| |
|
|||||||||| |||| || |||||||| |||||||| ||| |||| | ||||||||||||| |||| |||| ||||||| ||||||||| |
|
|
| T |
10717521 |
cataatttcaagttgatagcagtgatatttagtgtgattttttttttgctcatactttcatttgttatttctatctgctggatgaggaagagaaaccaaa |
10717422 |
T |
|
| Q |
139 |
aaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggattctcagataaaaacttgattgg |
238 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| ||||| | |||||||||||| |||||||| | |||||||||||| |
|
|
| T |
10717421 |
aaccatcctttgattcaccaactattgatcaactagctaaggtttcatatcaagacttacaccgaggaaccgatgggttctcagaaagaaacttgattgg |
10717322 |
T |
|
| Q |
239 |
atcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggtaatgttgttgctgtgaaagtcttcaacctccaaaacaatggagctagcaag |
338 |
Q |
| |
|
||||||| |||| ||||||||||||| ||||||||||||||| |||| ||||||||||| || || ||||| |||||| |||| || |||||| |||| |
|
|
| T |
10717321 |
atcaggaagttttggttctgtgtacaaaggaaatcttgtgtcagaagacaatgttgttgccgtaaaggtcttgaacctcaaaaagaagggagctcacaag |
10717222 |
T |
|
| Q |
339 |
agtttcattgttgaatgtaatgcact |
364 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
10717221 |
agtttcattgttgaatgtaatgcact |
10717196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 58 - 368
Target Start/End: Original strand, 10564674 - 10564984
Alignment:
| Q |
58 |
cagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacctggatgnnnnnnngaaaccaaaaaccatcttttgattcacc |
157 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||| || |||| |||| ||||||| |||| | ||| | ||||| ||||||||| |
|
|
| T |
10564674 |
cagtgataattagtgtggtttcttttcttctcatactttcatttatcataactatctactggatgaggaaaagaaatccaaagcgatcttgtgattcacc |
10564773 |
T |
|
| Q |
158 |
aacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggattctcagataaaaacttgattggatcaggaggtttcggttct |
257 |
Q |
| |
|
|||| ||||||||||| |||| ||||| |||||||| |||||||||||||||||||| |||||| || ||||||||| ||||||||| |||| ||| | |
|
|
| T |
10564774 |
aacagttgatcaactatctaaggtttcgtaccaagaattacatcaaggaaccgatgggttctcaactagaaacttgataggatcaggaagttttggtctt |
10564873 |
T |
|
| Q |
258 |
gtgtacagaggaaatcttgtgtcggaaggtaatgttgttgctgtgaaagtcttcaacctccaaaacaatggagctagcaagagtttcattgttgaatgta |
357 |
Q |
| |
|
||||||| ||||||||||||||| |||| |||||||||||| || || ||| | ||||||||||| || |||||| ||||||||||||||||||||||| |
|
|
| T |
10564874 |
gtgtacaaaggaaatcttgtgtcagaagataatgttgttgccgtaaaggtcctgaacctccaaaagaagggagctcacaagagtttcattgttgaatgta |
10564973 |
T |
|
| Q |
358 |
atgcactcaaa |
368 |
Q |
| |
|
||||||||||| |
|
|
| T |
10564974 |
atgcactcaaa |
10564984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 47 - 368
Target Start/End: Original strand, 10604388 - 10604709
Alignment:
| Q |
47 |
caggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacctggatgnnnnnnngaaaccaaaaaccatct |
146 |
Q |
| |
|
||||||| || ||||||||||| ||||||| ||||||||| ||||||||||| | || ||| |||| ||| || |||||||||| |||||| |
|
|
| T |
10604388 |
caggttgatagcagtgatagttggtgtggtgtcttttcttttcatactttcagttatcatagctatctattgggtgaggaaaagaaaccaaaacccatct |
10604487 |
T |
|
| Q |
147 |
tttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggattctcagataaaaacttgattggatcaggag |
246 |
Q |
| |
|
|||||||||||| ||||| ||||||||| ||| ||||||||||| || ||||| |||||||||||||| ||||| |||| |||||||||||||| |||| |
|
|
| T |
10604488 |
tttgattcaccagcaattcatcaactagataaggtttcataccatgacttacaccaaggaaccgatgggttctcggatagaaacttgattggattaggaa |
10604587 |
T |
|
| Q |
247 |
gtttcggttctgtgtacagaggaaatcttgtgtcggaaggtaatgttgttgctgtgaaagtcttcaacctccaaaacaatggagctagcaagagtttcat |
346 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||| |||||| |||||||| || ||| | ||||||||||| || ||||| ||||| |||||| |
|
|
| T |
10604588 |
gttttggttctgtgtacagaggaaatcttgtgtcagaagataatgtagttgctgtaaaggtcctgaacctccaaaagaagggagcacacaagaatttcat |
10604687 |
T |
|
| Q |
347 |
tgttgaatgtaatgcactcaaa |
368 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
10604688 |
tgttgaatgtaatgcactcaaa |
10604709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 10611317 - 10611663
Alignment:
| Q |
18 |
ggtagaaaacatgcaacacaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacct |
117 |
Q |
| |
|
||||| ||||| ||| |||||||| |||||| || || ||||||||||||| |||||||||||||| ||||| ||| ||| ||||||| |||| || |
|
|
| T |
10611317 |
ggtaggaaacacccaaaacaccatatattcaggctgatagcagtgatagttagcatggtttcttttcttctcatatttttatttattataactatctact |
10611416 |
T |
|
| Q |
118 |
ggatgnnnnnnngaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggatt |
217 |
Q |
| |
|
|| | ||| |||||| |||||| ||||||||| ||| ||||||| |||||| ||||||| || ||| ||| | |||||||||||||| || |
|
|
| T |
10611417 |
gggtaaggaaaataaatcaaaaaagatctttcgattcaccaccaaatgatcaagaagctaaggtttcattccgagacttataccaaggaaccgatgggtt |
10611516 |
T |
|
| Q |
218 |
ctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggtaatgttgttgctgtgaaagtcttcaacctc |
317 |
Q |
| |
|
|||||||| ||||||||| ||||||||| |||| ||| |||||||||||||||||||||||| |||| |||||||||||| | || |||||||||||| |
|
|
| T |
10611517 |
ctcagatagaaacttgatcggatcaggaagttttggtgatgtgtacagaggaaatcttgtgtcagaagacaatgttgttgctataaaggtcttcaacctc |
10611616 |
T |
|
| Q |
318 |
caaaacaatggagctagcaagagtttcattgttgaatgtaatgcact |
364 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10611617 |
caaaacaatggagctcacaagagtttcattgttgaatgtaatgcact |
10611663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 35 - 367
Target Start/End: Complemental strand, 10747600 - 10747268
Alignment:
| Q |
35 |
acaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacctggatgnnnnnnngaaac |
134 |
Q |
| |
|
||||||||| |||| |||||| |||||||||||||||| |||| ||||||| ||||||||||||| ||||||| |||| ||| | |||| |
|
|
| T |
10747600 |
acaccataaattcatgttggtcgcagtgatagttagtgttgttttttttcttctcatactttcatttattataactatctattgggtaagaaaaagaaat |
10747501 |
T |
|
| Q |
135 |
caaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggattctcagataaaaacttga |
234 |
Q |
| |
|
| ||| |||| | |||||||| ||||||||||||||||||| ||||||||||||||| |||||||| ||||| | || |||||| || |||||||| |
|
|
| T |
10747500 |
aacaaaagatctatcgattcacctacaattgatcaactagctacagtttcataccaagacttacatcatggaacaaacggtttctcaagtagaaacttga |
10747401 |
T |
|
| Q |
235 |
ttggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggtaatgttgttgctgtgaaagtcttcaacctccaaaacaatggagctag |
334 |
Q |
| |
|
| ||||||||| |||| ||||| ||||||| ||||||||||||||| ||| ||||| |||||| || |||||| | ||||| ||||| || |||||| |
|
|
| T |
10747400 |
tcggatcaggaagttttggttcagtgtacaaaggaaatcttgtgtccgaaaataatgctgttgccgtaaaagtcctaaaccttcaaaagaagggagctca |
10747301 |
T |
|
| Q |
335 |
caagagtttcattgttgaatgtaatgcactcaa |
367 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
10747300 |
caagagtttcattgttgaatgtaatgtactcaa |
10747268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 130 - 368
Target Start/End: Complemental strand, 19606355 - 19606117
Alignment:
| Q |
130 |
gaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggattctcagataaaaa |
229 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||| ||| || ||| ||||| |||||||| ||| |||| | ||||||||| ||||| |||| ||| |
|
|
| T |
19606355 |
gaaacaaaaaaccatcttcagattcaccaacaattgaccaattacctatggtttcctaccaagacttatatcaggcaaccgatgggttctcggatagaaa |
19606256 |
T |
|
| Q |
230 |
cttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggtaatgttgttgctgtgaaagtcttcaacctccaaaacaatgga |
329 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| | |||||||||| |||| |||| ||| ||| ||||||| || ||| | ||||| |||| || ||| |
|
|
| T |
19606255 |
cttgattggatcaggaggcttcggttccgtgtataaaggaaatcttatgtcagaagataaagttattgctgttaaggtcctgaaccttgaaaagaaggga |
19606156 |
T |
|
| Q |
330 |
gctagcaagagtttcattgttgaatgtaatgcactcaaa |
368 |
Q |
| |
|
||| ||||||||| ||| |||||||||||| |||||| |
|
|
| T |
19606155 |
gctcacaagagttttattactgaatgtaatgctctcaaa |
19606117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 37 - 368
Target Start/End: Original strand, 10580617 - 10580961
Alignment:
| Q |
37 |
accataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacctggatgnnnnnnngaaacca |
136 |
Q |
| |
|
|||||||||||| |||| || | ||||||| |||||||||||||||||| ||||||||||||| |||||| |||| ||||| | ||| | |
|
|
| T |
10580617 |
accataatttcaagttgatagctatgatagtcagtgtggtttcttttcttctcatactttcatttattatagctatctattggataagtaaaaggaacaa |
10580716 |
T |
|
| Q |
137 |
aaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggattctcagataaaaacttgatt |
236 |
Q |
| |
|
|||| |||| || ||||| ||| ||| |||||||||| ||| ||||||||| |||| ||||| ||||||| ||||| ||||| |||| |||| |||| |
|
|
| T |
10580717 |
aaaatcatcattagattcttcaataatagatcaactagataaggtttcatacaaagacttacacaaaggaactgatgggttctcggatagaaacatgatc |
10580816 |
T |
|
| Q |
237 |
ggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaag-------------gtaatgttgttgctgtgaaagtcttcaacctccaaaac |
323 |
Q |
| |
|
|| |||||| |||| ||||| ||||||| ||||||||||||||| |||| |||||||||||| || || ||||| ||||||||||| |
|
|
| T |
10580817 |
gggtcaggaagttttggttccgtgtacaaaggaaatcttgtgtcagaagataatgttgttgcataatgttgttgcagtaaaggtcttgaacctccaaaag |
10580916 |
T |
|
| Q |
324 |
aatggagctagcaagagtttcattgttgaatgtaatgcactcaaa |
368 |
Q |
| |
|
|| |||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
10580917 |
aaaggagctcacaagagttttattgttgaatgtaatgcactcaaa |
10580961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 138 - 364
Target Start/End: Original strand, 10558629 - 10558855
Alignment:
| Q |
138 |
aaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggattctcagataaaaacttgattg |
237 |
Q |
| |
|
|||||||||| |||||||||| |||||| ||||| |||| ||||| |||||||| || |||| | ||| ||||| |||||| || ||||||||||| |
|
|
| T |
10558629 |
aaaccatcttcagattcaccaataattgaccaacttgctatggtttcttaccaagacttgtatcaggcaactgatggcttctcatctagaaacttgattg |
10558728 |
T |
|
| Q |
238 |
gatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggtaatgttgttgctgtgaaagtcttcaacctccaaaacaatggagctagcaa |
337 |
Q |
| |
|
|||||||||| || ||||| ||||| | |||||||||| |||| |||| ||| ||| |||||||||| ||| | |||| |||| ||||||||| ||| |
|
|
| T |
10558729 |
gatcaggaggctttggttcggtgtataaaggaaatcttatgtcagaagataaagttattgctgtgaaggtcctggaccttgaaaagaatggagctcacaa |
10558828 |
T |
|
| Q |
338 |
gagtttcattgttgaatgtaatgcact |
364 |
Q |
| |
|
|||||| ||| |||||||||||||| |
|
|
| T |
10558829 |
gagttttattaccgaatgtaatgcact |
10558855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 170 - 364
Target Start/End: Original strand, 7192764 - 7192958
Alignment:
| Q |
170 |
actagctaaagtttcataccaagatttacatcaaggaaccgatggattctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagagga |
269 |
Q |
| |
|
||||||||||||||||||||| || | || || ||||| || || || || | || |||||| ||||||||||| | || ||||||||||||| |||| |
|
|
| T |
7192764 |
actagctaaagtttcataccaggaccttcaccagggaactgacgggttttctgctagaaacttagttggatcaggaagctttggttctgtgtacaaagga |
7192863 |
T |
|
| Q |
270 |
aatcttgtgtcggaaggtaatgttgttgctgtgaaagtcttcaacctccaaaacaatggagctagcaagagtttcattgttgaatgtaatgcact |
364 |
Q |
| |
|
||||||| || |||| ||| |||||||| ||||| ||| | ||||| ||||| || |||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
7192864 |
aatcttgaatcagaagataaagttgttgccgtgaaggtcatgaaccttcaaaagaagggagctcacaagagtttcattgctgaatgtaatgcact |
7192958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 175 - 368
Target Start/End: Complemental strand, 9836773 - 9836580
Alignment:
| Q |
175 |
ctaaagtttcataccaagatttacatcaaggaaccgatggattctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatct |
274 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||||| |||| |||||||||| ||| ||||||||||||||| |||| ||| | || |||| ||||||| | |
|
|
| T |
9836773 |
ctaaggtttcataccaagaactacatcatggaactgatgagttctcagatagaaatttgattggatcaggaagttttggtaccgtatacaaaggaaatat |
9836674 |
T |
|
| Q |
275 |
tgtgtcggaaggtaatgttgttgctgtgaaagtcttcaacctccaaaacaatggagctagcaagagtttcattgttgaatgtaatgcactcaaa |
368 |
Q |
| |
|
||| || ||| ||| ||||||||| | || || | |||||| |||| || |||||| |||||||| |||| ||||||||||||||||||| |
|
|
| T |
9836673 |
tgtatcacaagataaagttgttgctataaaggttctgaacctcaaaaagaagggagctcataagagttttattgctgaatgtaatgcactcaaa |
9836580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 10588907 - 10588800
Alignment:
| Q |
143 |
atcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggattctcagataaaaacttgattggatca |
242 |
Q |
| |
|
||||| |||| |||| |||| ||| || |||| ||| |||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
10588907 |
atcttctgatacacctacaactgaccagctagttaaggtttcataccaagaactacatcaaggaactgatggattctcagatggaaacttgattggatca |
10588808 |
T |
|
| Q |
243 |
ggaggttt |
250 |
Q |
| |
|
||| |||| |
|
|
| T |
10588807 |
ggaagttt |
10588800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 364
Target Start/End: Complemental strand, 10652642 - 10652458
Alignment:
| Q |
180 |
gtttcataccaagatttacatcaaggaaccgatggattctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgt |
279 |
Q |
| |
|
||||||||| |||| | || |||||||| |||||||| || | || |||| || |||||| |||| |||| ||||||||||||| ||||||||||| | |
|
|
| T |
10652642 |
gtttcatacaaagaccttcaccaaggaactgatggattttctgctagaaacctggttggattaggaagttttggttctgtgtacaaaggaaatcttgcat |
10652543 |
T |
|
| Q |
280 |
cggaaggtaatgttgttgctgtgaaagtcttcaacctccaaaacaatggagctagcaagagtttcattgttgaatgtaatgcact |
364 |
Q |
| |
|
| |||| ||| |||||||| | || ||| | ||||| ||||| || ||| || |||||| ||| ||||||||||||||||||| |
|
|
| T |
10652542 |
cagaagataaagttgttgccataaaggtcctgaaccttcaaaaaaagggatctcacaagagcttcgttgttgaatgtaatgcact |
10652458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 364
Target Start/End: Complemental strand, 10660526 - 10660341
Alignment:
| Q |
179 |
agtttcataccaagatttacatcaaggaaccgatggattctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtg |
278 |
Q |
| |
|
||||||||| ||||| | || |||||||| |||||||| || | || |||| | |||||| ||||||||| |||||||| |||| ||||||||||| |
|
|
| T |
10660526 |
agtttcatatcaagaccttcaccaaggaactgatggattttctgctagaaaccttgttggattaggaggttttggttctgtctacaaaggaaatcttgca |
10660427 |
T |
|
| Q |
279 |
tcggaaggtaatgttgttgctgtgaaagtcttcaacctccaaaacaatggagctagcaagagtttcattgttgaatgtaatgcact |
364 |
Q |
| |
|
|| |||| ||| ||||||| | || || | ||||| ||||| || |||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
10660426 |
tcagaagataaatttgttgccataaaggttctgaaccttcaaaataagggagctcacaagagcttcattgttgaatgtaatgcact |
10660341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 368
Target Start/End: Complemental strand, 10745897 - 10745864
Alignment:
| Q |
335 |
caagagtttcattgttgaatgtaatgcactcaaa |
368 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
10745897 |
caagagtttcattgttgaatgtaatacactcaaa |
10745864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 17924005 - 17923655
Alignment:
| Q |
18 |
ggtagaaaacatgcaacacaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacct |
117 |
Q |
| |
|
||||| |||||||||| ||| || || ||||||||| || |||||||||||||||||||||||||| || ||||||||||||| || || | |||| | |
|
|
| T |
17924005 |
ggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttcttttattctcatactttcatttatcatcactatctaca |
17923906 |
T |
|
| Q |
118 |
ggatgnnnnnnngaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggatt |
217 |
Q |
| |
|
|||| |||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
17923905 |
tgatgaggaagagaaatcaaaagagatcttttgattcaccaacaattgatcaactagctaaggtttcataccaagaattacacgtaggaaccgatggatt |
17923806 |
T |
|
| Q |
218 |
ctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggtaatgttgttgctgtgaaagtcttcaacctc |
317 |
Q |
| |
|
|||||||| |||| |||| ||||||||| |||| ||||| || |||||||||||| |||| || |||| |||||||||||| || |||||||| |||||| |
|
|
| T |
17923805 |
ctcagatagaaacatgatcggatcaggaagttttggttccgtatacagaggaaatattgtttcagaagataatgttgttgcagttaaagtcttgaacctc |
17923706 |
T |
|
| Q |
318 |
caaaacaatggagctagcaagagtttcattgttgaatgtaatgcactcaaa |
368 |
Q |
| |
|
|| || || |||||| |||||||||| ||||||||||||| ||||||||| |
|
|
| T |
17923705 |
cataaaaagggagctcacaagagtttcgttgttgaatgtaacgcactcaaa |
17923655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 138; Significance: 5e-72; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 18 - 364
Target Start/End: Original strand, 12948251 - 12948597
Alignment:
| Q |
18 |
ggtagaaaacatgcaacacaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacct |
117 |
Q |
| |
|
||||| |||||||||| || || || ||||||||| || ||| |||||||||||||||||||||| || ||||||||||||| || |||| |||| | |
|
|
| T |
12948251 |
ggtaggaaacatgcaaagcaacaaaagttcaggttgatagcagggatagttagtgtggtttcttttattctcatactttcatttatcataactatctaca |
12948350 |
T |
|
| Q |
118 |
ggatgnnnnnnngaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggatt |
217 |
Q |
| |
|
|||| |||| ||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| |||||| ||||||| |
|
|
| T |
12948351 |
tgatgaggaaaagaaatcaaaagagatcttttgattcacctacaattgatcaactagctaaggtttcataccaagaattacatgttggaacccatggatt |
12948450 |
T |
|
| Q |
218 |
ctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggtaatgttgttgctgtgaaagtcttcaacctc |
317 |
Q |
| |
|
|||||||| ||||||||| ||||||||| |||| ||||| || |||||||||||| |||| || |||| |||||||||||| || |||||||| |||||| |
|
|
| T |
12948451 |
ctcagatagaaacttgatcggatcaggaagttttggttccgtatacagaggaaatattgtttcagaagataatgttgttgcagtaaaagtcttgaacctc |
12948550 |
T |
|
| Q |
318 |
caaaacaatggagctagcaagagtttcattgttgaatgtaatgcact |
364 |
Q |
| |
|
|| || || |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12948551 |
cagaaaaagggagctcacaagagtttcattgttgaatgtaatgcact |
12948597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 12957685 - 12958035
Alignment:
| Q |
18 |
ggtagaaaacatgcaacacaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacct |
117 |
Q |
| |
|
||||| |||||||||| || || || ||||||||| || ||||||||||||||| |||||||||| || ||||||||||||| || |||| |||| | |
|
|
| T |
12957685 |
ggtaggaaacatgcaaagcaacacaagttcaggttgatagcagtgatagttagtgcggtttcttttattctcatactttcatttatcataactatctaca |
12957784 |
T |
|
| Q |
118 |
ggatgnnnnnnngaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggatt |
217 |
Q |
| |
|
|||| |||| ||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||| |||||| ||||||| |
|
|
| T |
12957785 |
tgatgaggaaaagaaatcaaaagagatcttttgattcacctacaattgatcaactagctaaggtttcataccaagaattacatgttggaaccaatggatt |
12957884 |
T |
|
| Q |
218 |
ctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggtaatgttgttgctgtgaaagtcttcaacctc |
317 |
Q |
| |
|
|||||||| ||||||||| ||||||||| |||| ||||| || |||||||||||| |||| || |||| |||||||||||| | |||||||| |||||| |
|
|
| T |
12957885 |
ctcagatagaaacttgatcggatcaggaagttttggttccgtatacagaggaaatattgtttcagaagataatgttgttgcaataaaagtcttgaacctc |
12957984 |
T |
|
| Q |
318 |
caaaacaatggagctagcaagagtttcattgttgaatgtaatgcactcaaa |
368 |
Q |
| |
|
|| || || |||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
12957985 |
cagaaaaagggagctcacaagagtttcattgttgaatgtaacgcactcaaa |
12958035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 12931886 - 12932236
Alignment:
| Q |
18 |
ggtagaaaacatgcaacacaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacct |
117 |
Q |
| |
|
||||| |||||||||| ||| || || ||||||||| || ||||| |||||||||||||||||||| || ||||||||||||| || |||| |||| | |
|
|
| T |
12931886 |
ggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtgctagttagtgtggtttcttttattctcatactttcatttatcataactatctaca |
12931985 |
T |
|
| Q |
118 |
ggatgnnnnnnngaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggatt |
217 |
Q |
| |
|
|||| |||| || || |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||| |
|
|
| T |
12931986 |
tgatgaggaaaagaaatcagaagagatcttttgattcaccaacaattgatcaactagctaaggtttcataccaagaattacatgttggaaccgatggatt |
12932085 |
T |
|
| Q |
218 |
ctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggtaatgttgttgctgtgaaagtcttcaacctc |
317 |
Q |
| |
|
|||| ||| |||| |||| ||||||||| |||| ||||| || |||| ||||||| | ||||| |||| |||||||||||| || || ||||| || || |
|
|
| T |
12932086 |
ctcaaatagaaacatgatcggatcaggaagttttggttccgtttacaaaggaaatatagtgtcagaagataatgttgttgcagtaaaggtcttgaatctg |
12932185 |
T |
|
| Q |
318 |
caaaacaatggagctagcaagagtttcattgttgaatgtaatgcactcaaa |
368 |
Q |
| |
|
||||| || |||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
12932186 |
caaaaaaagggagctcacaagagtttcattgttgaatgtaacgcactcaaa |
12932236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 12906797 - 12907147
Alignment:
| Q |
18 |
ggtagaaaacatgcaacacaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacct |
117 |
Q |
| |
|
||||| |||||||||| ||| || || ||||||||| || |||| ||||||||||||||||||||| || ||||||||||||| || |||| |||| | |
|
|
| T |
12906797 |
ggtaggaaacatgcaaaacaacacaagttcaggttgatagcagtcatagttagtgtggtttcttttattctcatactttcatttatcataactatctaca |
12906896 |
T |
|
| Q |
118 |
ggatgnnnnnnngaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggatt |
217 |
Q |
| |
|
|||| |||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
12906897 |
tgatgaggaaaagaaatcaaaagagatcttttgattcaccaacaattgatcaactagctaaggtttcataccaagaattacacgtaggaaccgatgaatt |
12906996 |
T |
|
| Q |
218 |
ctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggtaatgttgttgctgtgaaagtcttcaacctc |
317 |
Q |
| |
|
||| |||| |||| |||| ||||||||| |||| ||||| || |||| ||||||| |||| || |||| |||||||||||| || || ||||| |||||| |
|
|
| T |
12906997 |
ctcggatagaaacatgatcggatcaggaagttttggttccgtatacaaaggaaatattgtttcagaagataatgttgttgcagtaaaggtcttgaacctc |
12907096 |
T |
|
| Q |
318 |
caaaacaatggagctagcaagagtttcattgttgaatgtaatgcactcaaa |
368 |
Q |
| |
|
|||| || || ||| ||| |||||||||||||||||||| ||||||||| |
|
|
| T |
12907097 |
caaacaaagggcgctcacaaaagtttcattgttgaatgtaacgcactcaaa |
12907147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 12899177 - 12899527
Alignment:
| Q |
18 |
ggtagaaaacatgcaacacaccataatttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactttcattcattataattatcacct |
117 |
Q |
| |
|
||||| ||||||| || ||| || || ||||||||| || |||||||||||||||||||||||||| || ||||||||||||| || |||| |||| | |
|
|
| T |
12899177 |
ggtaggaaacatgtaaaacaacacaagttcaggttgatagcagtgatagttagtgtggtttcttttattctcatactttcatttatcataactatctaca |
12899276 |
T |
|
| Q |
118 |
ggatgnnnnnnngaaaccaaaaaccatcttttgattcaccaacaattgatcaactagctaaagtttcataccaagatttacatcaaggaaccgatggatt |
217 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||| ||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||| |
|
|
| T |
12899277 |
tgatgagtaaaataaatcaaaagagatcttttgattcaccagcaattgatcaactagctaaggtttcgtaccaagaattacacgtaggaaccgatggatt |
12899376 |
T |
|
| Q |
218 |
ctcagataaaaacttgattggatcaggaggtttcggttctgtgtacagaggaaatcttgtgtcggaaggtaatgttgttgctgtgaaagtcttcaacctc |
317 |
Q |
| |
|
|||||||| ||||||||| ||||||||| |||| ||||| || |||||||||||| | || || |||| |||||||||||| || || ||||| || || |
|
|
| T |
12899377 |
ctcagatagaaacttgatcggatcaggaagttttggttccgtatacagaggaaatatagtttcagaagataatgttgttgcagtaaaggtcttgaatctg |
12899476 |
T |
|
| Q |
318 |
caaaacaatggagctagcaagagtttcattgttgaatgtaatgcactcaaa |
368 |
Q |
| |
|
||||| || || ||| ||||||||||||| | |||||||||||||||||| |
|
|
| T |
12899477 |
caaaaaaagggtgctcacaagagtttcattttagaatgtaatgcactcaaa |
12899527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 31467739 - 31467687
Alignment:
| Q |
43 |
atttcaggttggtatcagtgatagttagtgtggtttcttttcttatcatactt |
95 |
Q |
| |
|
|||||| |||| || ||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
31467739 |
atttcaagttgatagcagtgatagttagtgtggtttcttttcttcttatactt |
31467687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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