View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1613_low_12 (Length: 339)
Name: NF1613_low_12
Description: NF1613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1613_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 35280012 - 35280325
Alignment:
| Q |
16 |
tcatcttcaccatagcaaaagcaaagtctcttctaaaagcaaaaccatttatactataagccctaaccaaagaaactggagaaccaacaccattgaaaag |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35280012 |
tcatcttcaccatagcaaaagcaaagtctcttctaaaagcaaaaccatttatactataagccctaaccaaagaaactggagaaccaacaccattgaaaag |
35280111 |
T |
|
| Q |
116 |
tgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggtgccaaattt |
215 |
Q |
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|||||||||||||| ||||||||||||||||||||| || |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
35280112 |
tgcttgatcagaattaagaagtcctttattagcaactagatccctataataattgttgtcaaaagtaacaggagagacagaatcaagaggagccaaattt |
35280211 |
T |
|
| Q |
216 |
gtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcggaaaaattgacatt |
315 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35280212 |
gtgtcaccgccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgttggtttcattgtatatgcgatttcggaaaaattgacatt |
35280311 |
T |
|
| Q |
316 |
ctgcttggcctatg |
329 |
Q |
| |
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|||||||||||||| |
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| T |
35280312 |
ctgcttggcctatg |
35280325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 35289357 - 35289670
Alignment:
| Q |
16 |
tcatcttcaccatagcaaaagcaaagtctcttctaaaagcaaaaccatttatactataagccctaaccaaagaaactggagaaccaacaccattgaaaag |
115 |
Q |
| |
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||||||||||||||||| |||||||||||| ||||||||| | |||| ||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
35289357 |
tcatcttcaccatagcagctgcaaagtctcttttaaaagcaatattatttctactataagtcctaaccaaagaaacttgagaaccaacaccattgaaaag |
35289456 |
T |
|
| Q |
116 |
tgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggtgccaaattt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35289457 |
agcttgatcagaatgaagaagtcctttattagcaacaaggtcattatagtaattgttgtcaaaagtaactggagagacagaatcaagaggtgccaaattt |
35289556 |
T |
|
| Q |
216 |
gtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcggaaaaattgacatt |
315 |
Q |
| |
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|||||||||||||| |||||| |||| ||||||||||||||||||||||||||| ||||| ||||| |||||||| ||| ||| |||||||||||||| |
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| T |
35289557 |
atgtcaccaccagaagtaggacaatttgattttcttaaggttgcaaagtttgtgtcaatgttggtttcgttgtatatacgagttctgaaaaattgacatt |
35289656 |
T |
|
| Q |
316 |
ctgcttggcctatg |
329 |
Q |
| |
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||||||| |||||| |
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| T |
35289657 |
ctgcttgacctatg |
35289670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 313
Target Start/End: Original strand, 35275245 - 35275542
Alignment:
| Q |
16 |
tcatcttcaccatagcaaaagcaaagtctcttctaaaagcaaaaccatttatactataagccctaaccaaagaaactggagaaccaacaccattgaaaag |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||| ||||| | ||||||| |||||||||||||| | |||||||| ||||||||||||| |
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| T |
35275245 |
tcatcttcaccatagcagcagcaaagtctctagaaaaagcagcaccatctctactatacttcctaaccaaagaaatttgagaaccaccaccattgaaaag |
35275344 |
T |
|
| Q |
116 |
tgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggtgccaaattt |
215 |
Q |
| |
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||||||||||||| ||||| ||||||||||||| ||||||| |||| ||||| |||||||| || ||||| ||||||||||| ||||| ||||| |
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| T |
35275345 |
aacttgatcagaatgtagaagacctttattagcaataaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggtgctaaattg |
35275444 |
T |
|
| Q |
216 |
gtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcggaaaaattgaca |
313 |
Q |
| |
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|||||||||||||| ||| || ||| |||||||||||| || |||||| |||| ||||| | |||||||| ||||||||||| |||||||||||| |
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| T |
35275445 |
gtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctgaaaaattgaca |
35275542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 21 - 329
Target Start/End: Original strand, 35322164 - 35322469
Alignment:
| Q |
21 |
ttcaccatagcaaaagcaaagtctcttctaaaagcaaaaccatttatactataagccctaaccaaagaaactggagaaccaacaccattgaaaagtgctt |
120 |
Q |
| |
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||||||||||||| |||||||||||||||||||| | |||||| |||||||| |||||||||| | || |||| ||| | |||||||| |||| |
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| T |
35322164 |
ttcaccatagcaacagcaaagtctcttctaaaagtagcaccattggtactataactcctaaccaaattatcttgagacccatta---ttgaaaagagctt |
35322260 |
T |
|
| Q |
121 |
gatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggtgccaaatttgtgtc |
220 |
Q |
| |
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|||||||||| | ||| ||||| | |||||||| | |||||||||| ||||||||| | ||||| || || ||||||||||| ||||| ||||| |
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| T |
35322261 |
gatcagaatggaaaagacctttgcttgcaacaagatttttatagtaattgttgtcaaaatttgttggagtgagagtgtcaagaggtgctaaattggtgtc |
35322360 |
T |
|
| Q |
221 |
accaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcggaaaaattgacattctgct |
320 |
Q |
| |
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|||||||||||||||||| ||| ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| || ||| || |
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| T |
35322361 |
accaccagaaagaggacaatttaatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaaattggcactctcct |
35322460 |
T |
|
| Q |
321 |
tggcctatg |
329 |
Q |
| |
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||||||||| |
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| T |
35322461 |
tggcctatg |
35322469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 107 - 329
Target Start/End: Original strand, 35307246 - 35307468
Alignment:
| Q |
107 |
attgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggt |
206 |
Q |
| |
|
||||||||| |||||||||||||| | ||| ||||| | |||||||||| |||||||||| || |||||| | ||||| || || |||||| ||| |
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|
| T |
35307246 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttatcaaaacttgttggagtgagagtatcaagtggt |
35307345 |
T |
|
| Q |
207 |
gccaaatttgtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcggaaaa |
306 |
Q |
| |
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|| ||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||| |
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|
| T |
35307346 |
gctaaattggtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
35307445 |
T |
|
| Q |
307 |
attgacattctgcttggcctatg |
329 |
Q |
| |
|
|||| || ||| ||||||||||| |
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|
| T |
35307446 |
attggcactctccttggcctatg |
35307468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 107 - 329
Target Start/End: Original strand, 35311589 - 35311814
Alignment:
| Q |
107 |
attgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggt |
206 |
Q |
| |
|
||||||||| ||||||||||||| | || ||||| | |||||||||| |||| ||||| ||||||||| | ||||| || || |||||| ||| |
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|
| T |
35311589 |
attgaaaaggacttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggt |
35311688 |
T |
|
| Q |
207 |
gccaaatttgtgtcac---caccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcgga |
303 |
Q |
| |
|
|| ||||| |||||| ||| ||||| || |||||| | ||||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||| || |
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|
| T |
35311689 |
gctaaattggtgtcattgtcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctga |
35311788 |
T |
|
| Q |
304 |
aaaattgacattctgcttggcctatg |
329 |
Q |
| |
|
| ||| |||| ||| ||||||||||| |
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|
| T |
35311789 |
acaatcgacactctccttggcctatg |
35311814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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