View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1613_low_13 (Length: 338)
Name: NF1613_low_13
Description: NF1613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1613_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 8 - 321
Target Start/End: Complemental strand, 13206227 - 13205915
Alignment:
| Q |
8 |
gagaagaagtaaattcgacggttgatttctttttctacaaagtaaattgttataaccattttgatcaagatgttatttggatattctcaagtttttccta |
107 |
Q |
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| T |
13206227 |
gagaagaagtaaattcgacagttgatttctttttctacaaagtaaattgttataaccattttgatcaagatgttatttggatattctcaagtttttccta |
13206128 |
T |
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| Q |
108 |
agctaaatctactctactatgtgtgttgccaaaaacatcttgttccaagatttttagaaaaggctttaagatcttgagctttttgtgaaacttatgcata |
207 |
Q |
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| T |
13206127 |
agctaaatctactctactatgtgtgttgccaaaaacatcttgttccaagatttt-agaaaaggctttaagatcttgagctttttgtgaagcttatgcata |
13206029 |
T |
|
| Q |
208 |
agagaaatagaaattgagatgtttcaactagaagctatcaaatcctcacaattgggattggtgttcgaagttataaagaacttaaatcttgagacaatat |
307 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13206028 |
agagaaatagaaattgagatgttccaactagaagctatcaaatcctcacaattgggattggtgttccaagttataaagaacttaaatcttgagacaatat |
13205929 |
T |
|
| Q |
308 |
taataggactatat |
321 |
Q |
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|||||||||||||| |
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| T |
13205928 |
taataggactatat |
13205915 |
T |
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