View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1613_low_17 (Length: 245)
Name: NF1613_low_17
Description: NF1613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1613_low_17 |
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| [»] scaffold1515 (1 HSPs) |
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| [»] scaffold1889 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 14408502 - 14408737
Alignment:
| Q |
4 |
cacgagcgttggagtagttaacatagccatatccaagagatgactgcgtcatctgatctctgcaaaccctaacagaaatcacaggggcaatctggctgaa |
103 |
Q |
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| T |
14408502 |
cacgagcgttggagtagttaacatagccataaccaagagatgactgcgtcatctgatctctgcaaaccctaacagaaatcacaggggcaatctggctgaa |
14408601 |
T |
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| Q |
104 |
cagatcatacagctgcgcatcatttacgttcccttgaagatcaccgacgtacaaagaagaattctcaaatcttccagcactggtcaaagctgctggaaca |
203 |
Q |
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| T |
14408602 |
cagatcatacagctgcgcatcatttacgttcccttgaagatcaccgacgtacaaagaagaattctcaaatcttccagcactggtcaaagctgctggaaca |
14408701 |
T |
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| Q |
204 |
acgatcgttggagatgaaattattgctgcctttgct |
239 |
Q |
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| T |
14408702 |
acgatctttggtgatgaaactattgctgccattgct |
14408737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1515 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold1515
Description:
Target: scaffold1515; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 38 - 239
Target Start/End: Original strand, 1 - 202
Alignment:
| Q |
38 |
aagagatgactgcgtcatctgatctctgcaaaccctaacagaaatcacaggggcaatctggctgaacagatcatacagctgcgcatcatttacgttccct |
137 |
Q |
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| T |
1 |
aagagatgactgcgtcatctgatcccggcaaaccctagcagaaagcactggtgcaatctgactgaacagatcataaagctggccctcattgacgttcctt |
100 |
T |
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| Q |
138 |
tgaagatcaccgacgtacaaagaagaattctcaaatcttccagcactggtcaaagctgctggaacaacgatcgttggagatgaaattattgctgcctttg |
237 |
Q |
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| T |
101 |
tcgagatcaccaacgtataaggaagcggtctcaaatcttccagtaccggtcaaagctgctggaacaacgatctttggtgatgaaaccactgctgccattg |
200 |
T |
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| Q |
238 |
ct |
239 |
Q |
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|| |
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| T |
201 |
ct |
202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1889 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold1889
Description:
Target: scaffold1889; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 1013 - 845
Alignment:
| Q |
4 |
cacgagcgttggagtagttaacatagccatatccaagagatgactgcgtcatctgatctctgcaaaccctaacagaaatcacaggggcaatctggctgaa |
103 |
Q |
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|||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| || |||||||| || ||||| || || ||||||| || |
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| T |
1013 |
cacgagcgttggagaagttgacatagccataaccaagagatgactgcgtcatctgatccctacaaaccctgacggaaataacgtggccaatctgatagag |
914 |
T |
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| Q |
104 |
cagatcatacagctgcgcatcatttacgttcccttgaagatcaccgacgtacaaagaagaattctcaaa |
172 |
Q |
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| T |
913 |
aggttcataaagctgggcctcattcaccttcctttcaagatcaccaacgtacaatgaagcattctcaaa |
845 |
T |
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