View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1613_low_2 (Length: 469)
Name: NF1613_low_2
Description: NF1613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1613_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 20 - 460
Target Start/End: Complemental strand, 8840617 - 8840160
Alignment:
| Q |
20 |
tctacctcaccctagtgtctgccattgcagcatacataggacagaaaatcattgacaagcttgtcaatatctttcaaagagcttccttgattatctttgt |
119 |
Q |
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| T |
8840617 |
tctacctcaccctagtgtctaccattgcagcatacataggacagaaaatcattgacaagcttgtcaatatctttcaaagagcttccttgattatctttgt |
8840518 |
T |
|
| Q |
120 |
tttatccttcacaattcttgttagtgcaattgcactaggtgagtaatgcttatatatgttataatgagtcaaattgccatgcttgttttaactatatcaa |
219 |
Q |
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| T |
8840517 |
tttatccttcacaattcttgttagtgcaattgcactaggtaagtaatgcttatatatgttataatgagtcaaattgtcatgtttgatttaactatatcaa |
8840418 |
T |
|
| Q |
220 |
-----------------atattttaaattgtgtatgtcaaatattcttgacattgcgaaaaattgcaatgtggttgcggacgcctccaaaacttgtatag |
302 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8840417 |
gagaatgttatggtcaaatattttaaattgtgcatgtcaaatattcttgacatcgcgaaaaattgcaatgtggttgcggacgcctccaaaacatgtatag |
8840318 |
T |
|
| Q |
303 |
aatttgtttctagacacatgcatgcaattgatgtgactaaaattgtggttgcgatgtgattgcagagacctctaaaaacgtcataataatcgcattgcag |
402 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8840317 |
aatttgtttctagacacatgcatgctattgatatgactaaaattgtggttgcaatgtgattgcagagacctctaaaaacgtcataataatcgcattgcgg |
8840218 |
T |
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| Q |
403 |
agaaaaatatgacgattgctaattaatttttacattttaagctttcatttccctatgc |
460 |
Q |
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| T |
8840217 |
agaaaaatatgacgattgctaattagtttttacattttaagctttcatttcactatgc |
8840160 |
T |
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