View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1613_low_20 (Length: 236)
Name: NF1613_low_20
Description: NF1613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1613_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 31108141 - 31108349
Alignment:
| Q |
12 |
atgagatatttaccagttacaaaaacatcaaagtaaagcnnnnnnnttctcaagggacaacttaatattaagataaaccaaaattaaaactcaacaagca |
111 |
Q |
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| T |
31108141 |
atgagatatttaccagttacaaaaacatcaaagtaaagcaaaaaaattctcaagggacaacttaatatgaagataaaccgaaattaaaactcaacaagca |
31108240 |
T |
|
| Q |
112 |
tcaaaaagtatatataagcatagaaaagaaaattgctgatgctataccctattcttcctttcttcttcaccttcctcagttgatactctcatccatcttt |
211 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31108241 |
tcaaaaagtatatataagcatagaaaataaaattgctgatgctataccctattcttcctttcttcttcaccttcctcagttgatactctcatccatcttt |
31108340 |
T |
|
| Q |
212 |
gtttgtcac |
220 |
Q |
| |
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||||||||| |
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| T |
31108341 |
gtttgtcac |
31108349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 31105078 - 31105115
Alignment:
| Q |
131 |
atagaaaagaaaattgctgatgctataccctattcttc |
168 |
Q |
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||||||||||||| ||||||||||||| |||||||||| |
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| T |
31105078 |
atagaaaagaaaactgctgatgctatatcctattcttc |
31105115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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