View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1613_low_22 (Length: 230)
Name: NF1613_low_22
Description: NF1613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1613_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 31809023 - 31809154
Alignment:
| Q |
1 |
ataagaaagtatagtcaactgaataatactacattgatttcatttcagttttcatacaaatcaaaccacaagtaatttttgtttcttaagttggtaacat |
100 |
Q |
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| T |
31809023 |
ataagagagtatagtcaactgaattatactacattgatttcatttcagttttcatacaaaccaaaccacaagtaatttttgtttcttaagttggtaacat |
31809122 |
T |
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| Q |
101 |
ttctgtcctccttaaagttaccttcaaaaagc |
132 |
Q |
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| T |
31809123 |
ttctgtcctccttaacgttaccttcaaaaagc |
31809154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 31809167 - 31809231
Alignment:
| Q |
155 |
gcagcctcttatcctatactggcctcacacaaaggnnnnnnnnngctgccttgtttgttgtttct |
219 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31809167 |
gcagcctcttatcctatactggcctcacacaaaggtttttttttgctgccttgtttgttgtttct |
31809231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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