View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1613_low_3 (Length: 467)
Name: NF1613_low_3
Description: NF1613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1613_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 20 - 467
Target Start/End: Original strand, 36635217 - 36635664
Alignment:
| Q |
20 |
actccaacactgatttgtcataaaagatgtctttccttctctagatcaagttctaatccagtctatttgttgtcatagtaattttattcttcacatatat |
119 |
Q |
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| T |
36635217 |
actccaacactgatttgtcataaaagatgtctttccttctctagatcaagttctaatccagtctatttgttgtcatagtaattttattcttcacatatat |
36635316 |
T |
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| Q |
120 |
gccggcgtgcaaccaacagatgattcttatagtaaacttgaatgacattgaagctcttataaacaaatgtgatttaagactggaaaattttattcttcat |
219 |
Q |
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| T |
36635317 |
gccggcgtgcaaccaatagatgattgttatagtaaacttgaatgacattgaagctcttataaacaaatgtgatttaagactggaaaattttattcttcat |
36635416 |
T |
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| Q |
220 |
ttatgatttcaatgctagattatacgtcaaattgattgttttgaattcatggtttacattttttattttgaaatcatagtttacaagagttgtttagttt |
319 |
Q |
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| T |
36635417 |
ttatgatttcaatgctagattatacgtcaaattgattgttttgaattcatggtttacattttttattttgaaatcatagtttacaagagttgtttagttt |
36635516 |
T |
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| Q |
320 |
catggtttgattagttaacacatgaaattattataaaaataaagaaggtcaaaattgacttgcattaacatcaaggagatacaatcatttcagagctaga |
419 |
Q |
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|||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36635517 |
catgatttgattagttaacacataaaattattataaacataaagaaggtcaaaattgacttgcattaacatcaaggagatacaatcatttcagagctaga |
36635616 |
T |
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| Q |
420 |
acatagaaagcctaatcacgctnnnnnnnctacaaagaaataaagctt |
467 |
Q |
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| T |
36635617 |
aaatagaaagcctaatcaagctaaaaaaattacaaagaaataaagctt |
36635664 |
T |
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