View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1613_low_4 (Length: 445)
Name: NF1613_low_4
Description: NF1613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1613_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 14407824 - 14408117
Alignment:
| Q |
18 |
aagaatcccgacacaatattaaagaatcccgacttaaccatgacataaaaacataatttaattactggggttttactcagaaaaaggaatttactttact |
117 |
Q |
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| T |
14407824 |
aagaatcccaacacagtattaaagaatcccgactcaaccatgacataaaaacataatttaattactggggttttactcagaaaaaggaatttactttact |
14407923 |
T |
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| Q |
118 |
ccttttgtaattagagtcataaaaatcaattaagaattgcaacaagttgggaaaatcttaacaactttagtagtcacgatgccaaggtttatgatatttc |
217 |
Q |
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| T |
14407924 |
ccttatgtaattagagtcataaaaatcaattaagaattgcaacaagttgggaaaatcttaacaactttagtagtcacgatgccaaggtttatgatatttc |
14408023 |
T |
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| Q |
218 |
cacaatcacttcattaacgcaattgcagacgtattacttgacagcaactttcaacacaaacaaagaatttctaccacgatttaaatgacaaata |
311 |
Q |
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| T |
14408024 |
cacaatcacttcattaacgcaattgcagacgtattacttgacaacaactttcaacacaaacaaagagtttctaccacgatttaaatgacaaata |
14408117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 366 - 445
Target Start/End: Original strand, 14408227 - 14408306
Alignment:
| Q |
366 |
cttttactacttcagaaaaaataagtgtacattagtaatcatatatagtcatcaaatttaattaagatttgcaataagtt |
445 |
Q |
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| T |
14408227 |
cttttactacttcagaaaaaataattgtactttagtaatcatatatagtcatcaaatttaattaagatttgcaataagtt |
14408306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 14397793 - 14397845
Alignment:
| Q |
132 |
agtcataaaaatcaattaagaattgcaacaagttgggaaaatcttaacaactt |
184 |
Q |
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| T |
14397793 |
agtcataaaaatcaatcaagaattgcaataagttgtgaaaatctaaacaactt |
14397845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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