View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1613_low_8 (Length: 396)
Name: NF1613_low_8
Description: NF1613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1613_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 10597931 - 10597666
Alignment:
| Q |
1 |
cccttcacttgcagaattgtcactgatatcatcattgttagctcccacaggtgattctttcaaagcagtcgtatcaagtttatcaaccacaataggaatg |
100 |
Q |
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| T |
10597931 |
cccttcacttgcagaattgtcactgatattatcatcgttagctcccacaggtgagtctttcaaagcagtggtatcaagtttatcaaccacaataggaatg |
10597832 |
T |
|
| Q |
101 |
tcactgacctctgattttgatttgcattctgaatccgttttgtcagaaaaattacttgtggaatccaatgcatcagcagcaattacaggactataatctt |
200 |
Q |
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|| |||||||||| |||||||||||||| |||||||||||||| || || ||||||||||||| ||||||||||||| ||||||||||| ||| | |
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| T |
10597831 |
tcgatgacctctgactttgatttgcattccaaatccgttttgtcaacaagatcacttgtggaatccgatgcatcagcagccattacaggactgctatcct |
10597732 |
T |
|
| Q |
201 |
cgttgattaatccatttggtagcattgtagtctttgctctctcacttgatgcagaatcaacatgcg |
266 |
Q |
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| T |
10597731 |
cattgattaatccatttggtagcattgtggtctttgttctctcacttaatgcagaatcaacatgcg |
10597666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 232 - 386
Target Start/End: Complemental strand, 10597664 - 10597510
Alignment:
| Q |
232 |
ctttgctctctcacttgatgcagaatcaacatgcgaccgagattcacttccaccatcatcatccttcatacagaaatattccttgggacttccattacca |
331 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| || | |
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| T |
10597664 |
ctttgttctctcacttgatgcagaatcaacatgcgaccgagattcacttctaccatcatcatccttcatacagaactgttccttgggacttccatcacta |
10597565 |
T |
|
| Q |
332 |
gtaccttcagatgaatctttttctgatgccactttctcttcttgctgctcttgat |
386 |
Q |
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| T |
10597564 |
gtaccttcagatgaatctttttctgatgccactttctcttcttgttgctcttgat |
10597510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 182 - 386
Target Start/End: Complemental strand, 53388425 - 53388221
Alignment:
| Q |
182 |
attacaggactataatcttcgttgattaatccatttggtagcattgtagtctttgctctctcacttgatgcagaatcaacatgcgaccgagattcacttc |
281 |
Q |
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|
|||||||||||| |||| || ||||||||||||| |||||||||||||| ||||| |||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
53388425 |
attacaggactacaatcctcattgattaatccatctggtagcattgtaggctttgttctctcacttgacgtagaatcaacatgcgaccgagattcacttc |
53388326 |
T |
|
| Q |
282 |
caccatcatcatccttcatacagaaatattccttgggacttccattaccagtaccttcagatgaatctttttctgatgccactttctcttcttgctgctc |
381 |
Q |
| |
|
|||| ||||||||||||||||| || | ||||||||||||||| | || | ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
53388325 |
caccgtcatcatccttcatacataattgttccttgggacttccctcactaataccttcagatgaatctttttctgatgccactttctcttcttgttgctc |
53388226 |
T |
|
| Q |
382 |
ttgat |
386 |
Q |
| |
|
||||| |
|
|
| T |
53388225 |
ttgat |
53388221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 53388560 - 53388427
Alignment:
| Q |
1 |
cccttcacttgcagaattgtcactgatatcatcattgttagctcccacaggtgattctttcaaagcagtcgtatcaagtttatcaaccacaataggaatg |
100 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||||| |||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
53388560 |
cccttcacttgaagaatcatcactaatatcatcattgtttgctcccacgggtaattctttcaaagcagtcgtatcaaatttatcaaccacaataggaatg |
53388461 |
T |
|
| Q |
101 |
tcactgacctctgattttgatttgcattctgaat |
134 |
Q |
| |
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|| ||||||||||||||||||||||||||||||| |
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|
| T |
53388460 |
tcgctgacctctgattttgatttgcattctgaat |
53388427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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