View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1613_low_9 (Length: 382)
Name: NF1613_low_9
Description: NF1613
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1613_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 17 - 375
Target Start/End: Original strand, 32812517 - 32812875
Alignment:
| Q |
17 |
acgttcaagattgaatcctccattgccgagagagtacgctgggaatgcagttttaacggcgtacgcttcggcaaagtgtgaggaattgaaggaaggtgaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32812517 |
acgttcaagattgaatcctccattgccgagagagtacgctgggaatgcagttttaacggcgtaagcttcggcaaagtgtgaggaattgaaggaaggtgaa |
32812616 |
T |
|
| Q |
117 |
ttctcaaggttggtggagatggtgtgggagggtacaaaaagaatgggtgatgagtatgcaaggtctattattgattggggagaattgtataatggttttc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32812617 |
ttctcaaggttggtggagatggtgtgggagggtacaaaaagaatgggtgatgagtatgcaaggtctattattgattggggagaattgtataatggttttc |
32812716 |
T |
|
| Q |
217 |
cgaatggagagcttttggtgtcttcatggtggaggttagggtttgaagaggtggagtatccatgggggaagcctaagtattgttgtccagtagtttatca |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32812717 |
cgaatggagagcttttggtgtcttcatggtggaggttagggtttgaagaggtggagtatccatgggggaagcctaagtattgttgtccagtggtttatca |
32812816 |
T |
|
| Q |
317 |
taagaaggatattatactattgttcccttcttttcacggaggtgaaggtggtgatgatg |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32812817 |
taagaaggatattatactattgttcccttcttttcacggagttgaaggtggtgatgatg |
32812875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 369
Target Start/End: Original strand, 32830047 - 32830399
Alignment:
| Q |
17 |
acgttcaagattgaatcctccattgccgagagagtacgctgggaatgcagttttaacggcgtacgcttcggcaaagtgtgaggaattgaaggaaggtgaa |
116 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
32830047 |
acgttcaagattgaatcctccattgccgagagcgtacactgggaatgcagtattaacagcgtacgcttcggcaaagtgtgaggaattgaaggaaggtgaa |
32830146 |
T |
|
| Q |
117 |
ttctcaaggttggtggagatggtgtgggagggtacaaaaagaatgggtgatgagtatgcaaggtctattattgattggggagaattgtataatggttttc |
216 |
Q |
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|| ||||||||||||||||||||| |||||| ||| ||||||| ||||||| |||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
32830147 |
ttttcaaggttggtggagatggtggaagagggttcaagaagaatgagtgatgaatatgcaagatctattattgattggggagagttgtataatggttttc |
32830246 |
T |
|
| Q |
217 |
cgaatggagagcttttggtgtcttcatggtggaggttagggtttgaagaggtggagtatccatgggggaagcctaagtattgttgtccagtagtttatca |
316 |
Q |
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| ||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
32830247 |
caaatggggatgttttggtgtcttcatggtggaggctagggtttgaagaggtggagtatccatgggggaagcctaagtattgttgtcctgtggtttatca |
32830346 |
T |
|
| Q |
317 |
taagaaggatattatactattgttcccttcttttcacggaggtgaaggtggtg |
369 |
Q |
| |
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|| |||||||||||||||||| || ||||||||| | |||||||||||||||| |
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|
| T |
32830347 |
taggaaggatattatactattatttccttcttttaatggaggtgaaggtggtg |
32830399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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