View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1624-INSERTION-7 (Length: 415)
Name: NF1624-INSERTION-7
Description: NF1624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1624-INSERTION-7 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 253
Target Start/End: Complemental strand, 15603665 - 15603421
Alignment:
| Q |
8 |
attcaatctatctttcatattcttgtcagatgaatgttttctcctcattcttaacccaaatttgaacccatccatccccattattcacacataggagaga |
107 |
Q |
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| T |
15603665 |
attcaatctatctttcatattcttgtcagatgagtgttttctcctcattcttaacccaaatctgaactcattcatccccattattcacaga-aggagaaa |
15603567 |
T |
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| Q |
108 |
agactctaattttcacaaagatgctccactcatcccccaccggcgtaaacaacaacaaccttcatactcaaatatggcctttaaactattctctaacctt |
207 |
Q |
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| T |
15603566 |
aggctctaattttcacaaagatgctccactcatcccccaccaccgtaaacaacaacaaccttcatacacaaatatggcctttaaactcttctctaacctt |
15603467 |
T |
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| Q |
208 |
caaactcaaattcaaattatcatacaaaagagatgaatctgttgga |
253 |
Q |
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| T |
15603466 |
caaactcaaattcaaattatcagacaaaagagatgaatctgttgga |
15603421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 15600195 - 15600141
Alignment:
| Q |
361 |
ttgattagaaaaaagaattgggttggtgatgaatgtttaatgattttcttttgat |
415 |
Q |
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| T |
15600195 |
ttgattagaaaaaagaattggactgatgatgaatgtttaatgtttttcttttgat |
15600141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 316
Target Start/End: Original strand, 42444491 - 42444802
Alignment:
| Q |
8 |
attcaatctatctttcatattcttgtcagatgaatgttttctcctcattcttaacccaaatttgaacccatccatccccattattcacacataggagaga |
107 |
Q |
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| T |
42444491 |
attcaatctatctttcatattgttttcagatgagtggtttctcctcattcttaacccaaatatgaacccattcatccccactattcacagaaaggagaaa |
42444590 |
T |
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| Q |
108 |
agactctaattttcacaaagatgctccactcatcccccaccggcgtaaaca---acaacaaccttcatactcaaatatggcctttaaactattctctaac |
204 |
Q |
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| T |
42444591 |
atgctctaattttcacaaagaggctccactcatctcccaccgtcgtgaacaacaacaacaaccttcatacttaaatctggcctttaaacacttatctaac |
42444690 |
T |
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| Q |
205 |
cttcaaactcaaattcaaattatcatacaaaagagatgaatctgttggaacctgaagcatgaatttgttgctttctaaaaatttggagctgattaaaatg |
304 |
Q |
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| T |
42444691 |
gttcaaactcaaattcaaattatcatacaaaagagatgactctgttggaacctgaagcatgaatttgttgctttctcaaaatttggatatgattgaaatg |
42444790 |
T |
|
| Q |
305 |
ggtttgatttgg |
316 |
Q |
| |
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| T |
42444791 |
ggtttgatttgg |
42444802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 351 - 415
Target Start/End: Original strand, 42445461 - 42445524
Alignment:
| Q |
351 |
gatgaagatcttgattagaaaaaagaattgggttggtgatgaatgtttaatgattttcttttgat |
415 |
Q |
| |
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| T |
42445461 |
gatgaagatcttgattaaaaaaaa-aattgggttgatgatgaatgtttaatgtttttcttttgat |
42445524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 313
Target Start/End: Original strand, 38659182 - 38659254
Alignment:
| Q |
241 |
tgaatctgttggaacctgaagcatgaatttgttgctttctaaaaatttggagctgattaaaatgggtttgatt |
313 |
Q |
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| T |
38659182 |
tgaatttgttggagcatgaagcatgaatttgttgctttctaaaattttggatctgattcaaataggttggatt |
38659254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 38659081 - 38659156
Alignment:
| Q |
155 |
aacaacaacaaccttcatactcaaatatggcctttaaactattctctaaccttcaaactcaaattcaaattatcat |
230 |
Q |
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| T |
38659081 |
aacaaaaacaaccttcaaacccaaatctgacctttaaactcttctttaatcttcaaactcgaattcgaagtatcat |
38659156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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