View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1631-INSERTION-2 (Length: 372)
Name: NF1631-INSERTION-2
Description: NF1631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1631-INSERTION-2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 8 - 372
Target Start/End: Original strand, 9535360 - 9535728
Alignment:
| Q |
8 |
caaacaactatgattcttatttggagaggctcaaatga----gaaaggtattcatctagtaggttggagtaaaattgctcgtccaaagtttcttggtggc |
103 |
Q |
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|||||||||| |||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9535360 |
caaacaactaggatttttatttggagaggctcaaattaatgcgaaaggtattcatctagtaggttggagtaaaattgctcgtccaaagtttcttggtggc |
9535459 |
T |
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| Q |
104 |
atcggtatcaaaccagctagggaagcaaatgtttgccttcttgggaagctcgtttgggattgggttcaatcatttgacaaactataggttaatatcctat |
203 |
Q |
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| T |
9535460 |
ctcggtatcaaacctgctagggaagcaaatgtttgcctttttgggaagctcgtttgggattgggttcaatcatttgacaaactatgaaataatatcctat |
9535559 |
T |
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| Q |
204 |
caaacaaatatgcagtcagtcacaaagttcttcaagaaaatgcgagtttgagtagctctcctatttggtcctatgtcatcaaagcaaaaaatgtccttaa |
303 |
Q |
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| T |
9535560 |
caaaaaaatatgcagtcagtcacaaagttcttcaagaaaatgcgagtttgagtagctctcctatttggtcctatgtcatcaaagcaaaaaatgtccttaa |
9535659 |
T |
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| Q |
304 |
agaagggtattctttgtgtgcgggttgcggatcttcgtccttttggttcaccaattggagcactcttga |
372 |
Q |
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| T |
9535660 |
agaagggtattctttgtgtgcggtttgcggatcttcgtccttttggttcaccaattggagcactcttga |
9535728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 26 - 371
Target Start/End: Complemental strand, 35062591 - 35062246
Alignment:
| Q |
26 |
atttggagaggctcaaatgagaaaggtattcatctagtaggttggagtaaaattgctcgtccaaagtttcttggtggcatcggtatcaaaccagctaggg |
125 |
Q |
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|||| ||||||||||||||| |||||||| ||||| |||||||||||||||||| | || | | |||||||||||| |||||||| || || | |||| |
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| T |
35062591 |
atttagagaggctcaaatgacaaaggtatccatctggtaggttggagtaaaatttcccgcaccatgtttcttggtggactcggtatctaaacaaccaggg |
35062492 |
T |
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| Q |
126 |
aagcaaatgtttgccttcttgggaagctcgtttgggattgggttcaatcatttgacaaactataggttaatatcctatcaaacaaatatgcagtcagtca |
225 |
Q |
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|| | ||| ||||||| ||||||||||| |||||||||| |||||||||| | ||||| | ||||| |||| ||| | ||||||||| || | || |
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| T |
35062491 |
aaactaatatttgcctgcttgggaagcttgtttgggatttggttcaatcaacaaataaactgtgcgttaacctcctctcatataaatatgcaatcggcca |
35062392 |
T |
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| Q |
226 |
caaagttcttcaagaaaatgcgagtttgagtagctctcctatttggtcctatgtcatcaaagcaaaaaatgtccttaaagaagggtattctttgtgtgcg |
325 |
Q |
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||| || ||||||| ||||| | | || ||||| ||||| | ||||| |||| |||| ||||||||| ||||| || || ||||||| ||| || |
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| T |
35062391 |
caacgtccttcaagcaaatgttaactctagcagctcacctatatagtcctcaatcattaaagaaaaaaatgttcttaaggatggctattcttagtgaacg |
35062292 |
T |
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| Q |
326 |
ggttgcggatcttcgtccttttggttcaccaattggagcactcttg |
371 |
Q |
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|| | |||||||||||| |||||||||| ||| ||||||||||||| |
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| T |
35062291 |
gggtccggatcttcgtcattttggttcagcaagtggagcactcttg |
35062246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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