View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1631-INSERTION-4 (Length: 506)

Name: NF1631-INSERTION-4
Description: NF1631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1631-INSERTION-4
NF1631-INSERTION-4
[»] chr2 (4 HSPs)
chr2 (186-426)||(3083050-3083289)
chr2 (186-426)||(38403845-38404072)
chr2 (432-506)||(38404139-38404213)
chr2 (82-113)||(38403633-38403664)
[»] chr1 (7 HSPs)
chr1 (198-426)||(40909811-40910038)
chr1 (432-506)||(33814113-33814187)
chr1 (432-506)||(33873583-33873657)
chr1 (182-249)||(33814025-33814092)
chr1 (182-249)||(33873495-33873562)
chr1 (78-113)||(33813816-33813851)
chr1 (84-113)||(33873292-33873321)
[»] scaffold0036 (3 HSPs)
scaffold0036 (186-426)||(99435-99662)
scaffold0036 (432-506)||(99729-99803)
scaffold0036 (78-113)||(99219-99254)
[»] chr8 (2 HSPs)
chr8 (78-113)||(36236266-36236301)
chr8 (378-426)||(24469255-24469303)
[»] chr3 (1 HSPs)
chr3 (78-113)||(31232175-31232210)


Alignment Details
Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 186 - 426
Target Start/End: Original strand, 3083050 - 3083289
Alignment:
Q  186 tgtaaggcagcaggtttgttacttacaaggatgtccaatttctggtgtactgctttattcatttagggactgagaatgaggagactgctattggagttaa 285  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||   ||||||||||| |||||||||||||||||    
T  3083050 tgtaaggcagctggtttgttacttacaaggatgtccaatttttggtgttctgctttattcatttaggggtggagaatgaggaaactgctattggagttaa 3083149  T
Q  286 catacatgtgcacaagccttaattggaataactacatcttatgcatgaggaactttcacttggtttgagcattaaaggttgcttacctcacgattttaag 385  Q
    ||||||||||||||| | |||||||||| | |||||||||||||| |||||||||||| |||||||||| |||||||||| ||||||||| |||||  ||    
T  3083150 catacatgtgcacaaactttaattggaacagctacatcttatgcaagaggaactttcatttggtttgagaattaaaggttacttacctca-gatttatag 3083248  T
Q  386 tagctatttgactgcattttctttgagaaaacaatggctac 426  Q
    ||||||||| |||||||| ||| |||| |||||||||||||    
T  3083249 tagctatttaactgcattctctctgagcaaacaatggctac 3083289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 186 - 426
Target Start/End: Original strand, 38403845 - 38404072
Alignment:
Q  186 tgtaaggcagcaggtttgttacttacaaggatgtccaatttctggtgtactgctttattcatttagggactgagaatgaggagactgctattggagttaa 285  Q
    ||||||||||||||||| |||||||||| |||||||||||| ||||||   ||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  38403845 tgtaaggcagcaggtttattacttacaatgatgtccaatttttggtgt---gctttattcatttaggggctgagaatgaggagactgccattggagttaa 38403941  T
Q  286 catacatgtgcacaagccttaattggaataactacatcttatgcatgaggaactttcacttggtttgagcattaaaggttgcttacctcacgattttaag 385  Q
              ||||| | ||||||| ||||||||||||||| |    ||  |||||||||| | |||||||||||||||||||||||||| |||||||||    
T  38403942 ----------cacaaactttaattgtaataactacatcttaagttgcagctactttcacttaggttgagcattaaaggttgcttacctcaggattttaag 38404031  T
Q  386 tagctatttgactgcattttctttgagaaaacaatggctac 426  Q
    |||||||||||||||||| ||| |||| |||||||||||||    
T  38404032 tagctatttgactgcattctctctgagcaaacaatggctac 38404072  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 432 - 506
Target Start/End: Original strand, 38404139 - 38404213
Alignment:
Q  432 aaattaacgtgataatttttgtgtttcttactttgtttgaattgattgaaattgaaaagtaattattgttattga 506  Q
    |||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  38404139 aaattaacttgagaatttttttgtttctttctttgtttgaattgattgaaattgaaaagtgattattgttattga 38404213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 113
Target Start/End: Original strand, 38403633 - 38403664
Alignment:
Q  82 taggttcatgttggttttgtagcgattgcaaa 113  Q
    ||||||||||||||||||||||||||||||||    
T  38403633 taggttcatgttggttttgtagcgattgcaaa 38403664  T

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Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 198 - 426
Target Start/End: Original strand, 40909811 - 40910038
Alignment:
Q  198 ggtttgttacttacaaggatgtccaatttctggtgtactgctttattcatttagggactgagaatgaggagactgctattggagttaacatacatgtgca 297  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| | |||||| |||| |||||||||||||||||||||||||||||    
T  40909811 ggtttgttacttacaaggatgtccaatttttggtgttctgctttattcatttaggggcggagaataaggaaactgctattggagttaacatacatgtgca 40909910  T
Q  298 caagccttaattggaataactacatcttatgcatgaggaactttcacttggtttgagcattaaaggttgcttacctcacgattttaagtagctatttgac 397  Q
    ||| | |||||||||| | |||||||||||||| |||||||||||| |||||||||| |||||||||| ||||||||| |||||  ||||||||||| ||    
T  40909911 caaactttaattggaacagctacatcttatgcaagaggaactttcatttggtttgagaattaaaggttacttacctca-gatttatagtagctatttaac 40910009  T
Q  398 tgcattttctttgagaaaacaatggctac 426  Q
    |||||| ||| |||| |||||||||||||    
T  40910010 tgcattctctctgagcaaacaatggctac 40910038  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 432 - 506
Target Start/End: Original strand, 33814113 - 33814187
Alignment:
Q  432 aaattaacgtgataatttttgtgtttcttactttgtttgaattgattgaaattgaaaagtaattattgttattga 506  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  33814113 aaattaacttgataatttttgtgtttcttcctttgtttgaattgattgaaattgaaaagtgattattgttattga 33814187  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 432 - 506
Target Start/End: Original strand, 33873583 - 33873657
Alignment:
Q  432 aaattaacgtgataatttttgtgtttcttactttgtttgaattgattgaaattgaaaagtaattattgttattga 506  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  33873583 aaattaacttgataatttttgtgtttcttcctttgtttgaattgattgaaattgaaaagtgattattgttattga 33873657  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 33814025 - 33814092
Alignment:
Q  182 ggtatgtaaggcagcaggtttgttacttacaaggatgtccaatttctggtgtactgctttattcattt 249  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||    
T  33814025 ggtatgtaaggcagcaggtttgttacttacaaggatgttcaatttttggtgtgctgctttattcattt 33814092  T

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Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 33873495 - 33873562
Alignment:
Q  182 ggtatgtaaggcagcaggtttgttacttacaaggatgtccaatttctggtgtactgctttattcattt 249  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||    
T  33873495 ggtatgtaaggcagcaggtttgttacttacaaggatgttcaatttttggtgtgctgctttattcattt 33873562  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 113
Target Start/End: Original strand, 33813816 - 33813851
Alignment:
Q  78 ttgataggttcatgttggttttgtagcgattgcaaa 113  Q
    |||| |||||||||||||||||||||||||||||||    
T  33813816 ttgacaggttcatgttggttttgtagcgattgcaaa 33813851  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 113
Target Start/End: Original strand, 33873292 - 33873321
Alignment:
Q  84 ggttcatgttggttttgtagcgattgcaaa 113  Q
    ||||||||||||||||||||||||||||||    
T  33873292 ggttcatgttggttttgtagcgattgcaaa 33873321  T

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Target: scaffold0036 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 186 - 426
Target Start/End: Original strand, 99435 - 99662
Alignment:
Q  186 tgtaaggcagcaggtttgttacttacaaggatgtccaatttctggtgtactgctttattcatttagggactgagaatgaggagactgctattggagttaa 285  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||   ||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  99435 tgtaaggcagcaggtttattacttacaaggatgtccaatttttggtgt---gctttattcatttaggggctgagaatgaggagactgccattggagttaa 99531  T
Q  286 catacatgtgcacaagccttaattggaataactacatcttatgcatgaggaactttcacttggtttgagcattaaaggttgcttacctcacgattttaag 385  Q
              ||||| | ||||||| ||||||||||||||| |    ||  |||||||||| | |||||||||||||||||||||||||| |||||||||    
T  99532 ----------cacaaactttaattgtaataactacatcttaagttgcagctactttcacttaggttgagcattaaaggttgcttacctcaggattttaag 99621  T
Q  386 tagctatttgactgcattttctttgagaaaacaatggctac 426  Q
    |||||||||||||||||| ||| |||| |||||||||||||    
T  99622 tagctatttgactgcattctctctgagcaaacaatggctac 99662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 432 - 506
Target Start/End: Original strand, 99729 - 99803
Alignment:
Q  432 aaattaacgtgataatttttgtgtttcttactttgtttgaattgattgaaattgaaaagtaattattgttattga 506  Q
    |||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  99729 aaattaacttgagaatttttttgtttctttctttgtttgaattgattgaaattgaaaagtgattattgttattga 99803  T

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Target: scaffold0036; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 113
Target Start/End: Original strand, 99219 - 99254
Alignment:
Q  78 ttgataggttcatgttggttttgtagcgattgcaaa 113  Q
    |||| |||||||||||||||||||||||||||||||    
T  99219 ttgacaggttcatgttggttttgtagcgattgcaaa 99254  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 113
Target Start/End: Complemental strand, 36236301 - 36236266
Alignment:
Q  78 ttgataggttcatgttggttttgtagcgattgcaaa 113  Q
    |||| |||||||||||||||||||||||||||||||    
T  36236301 ttgacaggttcatgttggttttgtagcgattgcaaa 36236266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 426
Target Start/End: Complemental strand, 24469303 - 24469255
Alignment:
Q  378 attttaagtagctatttgactgcattttctttgagaaaacaatggctac 426  Q
    ||||||||||||||||||||  |||| ||| |||| |||||||||||||    
T  24469303 attttaagtagctatttgaccacattctctctgagcaaacaatggctac 24469255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 113
Target Start/End: Original strand, 31232175 - 31232210
Alignment:
Q  78 ttgataggttcatgttggttttgtagcgattgcaaa 113  Q
    |||| |||||||||||||||||||||||||||||||    
T  31232175 ttgacaggttcatgttggttttgtagcgattgcaaa 31232210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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