View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1631_high_2 (Length: 430)
Name: NF1631_high_2
Description: NF1631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1631_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 73 - 416
Target Start/End: Original strand, 17727819 - 17728163
Alignment:
| Q |
73 |
catcgtgttgttttatgtgtg-atcataagcataaaacaatagaaaactgcatggttcatatgcacaagcatcatggattcttcattccagatgttgagt |
171 |
Q |
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|||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17727819 |
catcgtgttgttttatgtgtccaagataagcacaaaacaatagaaaactgcatggttcatatgcacaagcatcatggatttttcattccagatgttgagt |
17727918 |
T |
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| Q |
172 |
atttgaaagatccaaaaggactcctcacttatcttggactgaaggtataattctgtgaccctctcccnnnnnnngattatgttttgtttggtctgaaaaa |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
17727919 |
atttgaaagatccaaaaggactcctcacttatcttggactgaaggtataattctgtgaccctttcccaaaaaaagattatgttttgtttggtctgaaaaa |
17728018 |
T |
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| Q |
272 |
ataataatatctttccaatttgtaggtcaaaagagactacttgtgtctgtactgcgacgatcggtgtcatcctttcagcagcttggaagcagtcaggaaa |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17728019 |
ataataatatctttccaatttgtaggtcaaaagagactacttgtgtctgtactgcgacgatcggtgtcatcctttcagcagcttggaagcaatcaggaaa |
17728118 |
T |
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| Q |
372 |
cacatggcagcaaaaaatcactgcaaagtgcattatggagatgat |
416 |
Q |
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| T |
17728119 |
cacatggcagcaaaaaatcactgcaaagtgcattatggagatgat |
17728163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 73 - 416
Target Start/End: Original strand, 1511067 - 1511410
Alignment:
| Q |
73 |
catcgtgttgttttatgtgtgatcataagcataaaacaatagaaaactgcatggttcatatgcacaagcatcatggattcttcattccagatgttgagta |
172 |
Q |
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| T |
1511067 |
catcgtgttgttttatgtgtgatcataagcacaaaacaatagaaaactgcatggttcatatgcacaagcatcatggattcttcattccagatgttgagta |
1511166 |
T |
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| Q |
173 |
tttgaaagatccaaaaggactcctcacttatcttggactgaaggtataattctgtgaccctctcccnnnnnnngattatgttttgtttggtctgaaaaaa |
272 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||| |||||||||||||||| |
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| T |
1511167 |
tttgaaagatccaaaaggactcctcacttatcttgggctgaaggtataattctgcgaccctctcccaaaaaaagaatatgtttggtttggtctgaaaaaa |
1511266 |
T |
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| Q |
273 |
taataatatctttccaatttgtaggtcaaaagagactacttgtgtctgtactgcgacgatcggtgtcatcctttcagcagcttggaagcagtcaggaaac |
372 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1511267 |
tactaatatctttccaatttgtaggtcaaaagagactacttgtgtctgtactgcaacgatcagtgtcatcctttcagcagcttggaagcagtcaggaaac |
1511366 |
T |
|
| Q |
373 |
acatggcagcaaaaaatcactgcaaagtgcattatggagatgat |
416 |
Q |
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|||||| ||| |||||||||||||| ||||||||||| |||||| |
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| T |
1511367 |
acatggtagcgaaaaatcactgcaaggtgcattatggtgatgat |
1511410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 180 - 397
Target Start/End: Original strand, 25462567 - 25462784
Alignment:
| Q |
180 |
gatccaaaaggactcctcacttatcttggactgaaggtataattctgtgaccctctcccnnnnnnngattatgttttgtttggtctgaaaaaataataat |
279 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| || ||||||| |||||||| ||||||||| |||| |
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| T |
25462567 |
gatccaaaaggactcctcacatatcttgggctgaaggtataattctgcgaccctctcccaaaaaaagaatatgtttggtttggtcggaaaaaatactaat |
25462666 |
T |
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| Q |
280 |
atctttccaatttgtaggtcaaaagagactacttgtgtctgtactgcgacgatcggtgtcatcctttcagcagcttggaagcagtcaggaaacacatggc |
379 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25462667 |
acctttccaatttgtaggtcaaaagagactacttgtgtctgtactgcaacgatcagtgtcatcctttcagcagcttggaagcagtcaggaaacacatggt |
25462766 |
T |
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| Q |
380 |
agcaaaaaatcactgcaa |
397 |
Q |
| |
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||| |||||||||||||| |
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| T |
25462767 |
agcgaaaaatcactgcaa |
25462784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 25462489 - 25462566
Alignment:
| Q |
73 |
catcgtgttgttttatgtgtgatcataagcataaaacaatagaaaactgcatggttcatatgcacaagcatcatggat |
150 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25462489 |
catcgtgttgttttatgtgtgatcataagcacaaaacaatagaaaactgcatggttcatatgcacaagcatcatggat |
25462566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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