View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1631_high_3 (Length: 228)
Name: NF1631_high_3
Description: NF1631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1631_high_3 |
 | |
|
| [»] scaffold0568 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0568 (Bit Score: 92; Significance: 8e-45; HSPs: 2)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 2398 - 2509
Alignment:
| Q |
99 |
ggttctgtttgctgttttggtgggtgctgccttctgtcagaggcggttgctgctgtgtgcacctgctgtcagtcggtgtttgctgctgccagcagcttct |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2398 |
ggttctgtttgctgttttggtgggtgctgccttctgttaggggcggctgctgctgtgtgcacctgctgtcagctggtgtttgctgctgccagcagcttct |
2497 |
T |
|
| Q |
199 |
gtggtgcggttc |
210 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2498 |
gtggtgcggttc |
2509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 9000 - 9111
Alignment:
| Q |
99 |
ggttctgtttgctgttttggtgggtgctgccttctgtcagaggcggttgctgctgtgtgcacctgctgtcagtcggtgtttgctgctgccagcagcttct |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9000 |
ggttctgtttgctgttttggtgggtgctgccttctgttaggggcggctgctgctgtgtgcacctgctgtcagctggtgtttgctgctgccagcagcttct |
9099 |
T |
|
| Q |
199 |
gtggtgcggttc |
210 |
Q |
| |
|
|||||||||||| |
|
|
| T |
9100 |
gtggtgcggttc |
9111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 17060422 - 17060534
Alignment:
| Q |
99 |
ggttctgtttgctgttttggtgggtgctgccttctgtcagagg-cggttgctgctgtgtgcacctgctgtcagtcggtgtttgctgctgccagcagcttc |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || || ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17060422 |
ggttctgtttgctgttttggtgggtgctgccttctgttagggggcggctgctgctgtgtgcacctgctgtcagctggtgtttgctgctgccagcagcttc |
17060521 |
T |
|
| Q |
198 |
tgtggtgcggttc |
210 |
Q |
| |
|
||||||||||||| |
|
|
| T |
17060522 |
tgtggtgcggttc |
17060534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 88 - 179
Target Start/End: Original strand, 48223871 - 48223962
Alignment:
| Q |
88 |
tgttgtttgcgggttctgtttgctgttttggtgggtgctgccttctgtcagaggcggttgctgctgtgtgcacctgctgtcagtcggtgttt |
179 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||| | ||||| ||||||| ||||||||||||||||| ||||||| |
|
|
| T |
48223871 |
tgttgttcgcaggttctgtttgctgttttggtgggtgctgccttctgttaagggcggctgctgctatgtgcacctgctgtcagctggtgttt |
48223962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 48223810 - 48223847
Alignment:
| Q |
8 |
gtagttgtgtttggggtgtttttctggtggactggcttt |
46 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
48223810 |
gtagttgtgtttggggtg-ttttctggtggactggcttt |
48223847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 49571424 - 49571497
Alignment:
| Q |
140 |
ggcggttgctgctgtgtgcacctgctgtcagtcggtgtttgctgctgccagcagct-tctgtggtgcggttctg |
212 |
Q |
| |
|
|||||||| |||| | ||| |||||||||||| |||||| || ||||||||||||| ||||||| ||||||||| |
|
|
| T |
49571424 |
ggcggttggtgctatttgctcctgctgtcagttggtgttagcagctgccagcagctatctgtggcgcggttctg |
49571497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 5357132 - 5357188
Alignment:
| Q |
140 |
ggcggttgctgctgtgtgcacctgctgtcagtcggtgtttgctgctgccagcagctt |
196 |
Q |
| |
|
|||||||| |||| | ||| |||||||||||| |||||| || |||||||||||||| |
|
|
| T |
5357132 |
ggcggttggtgctatttgctcctgctgtcagttggtgttagcagctgccagcagctt |
5357188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 8564 times since January 2019
Visitors: 7803