View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1637-INSERTION-2 (Length: 709)
Name: NF1637-INSERTION-2
Description: NF1637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1637-INSERTION-2 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 254 - 709
Target Start/End: Original strand, 13151895 - 13152353
Alignment:
| Q |
254 |
atgtgacaattatttggtggagatatattatatgagttgtggttacaggatcaaaacaagacaaccaatttattt---atatacataaagagagcaacca |
350 |
Q |
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| T |
13151895 |
atgtgacaattatgtggtggagatatattatatgagttgtggttacaagatcaaaacaagacaaccattttatttcagatatacataaagagagcaacct |
13151994 |
T |
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| Q |
351 |
taattatataattaagtgtcaccctttcttaaaacaaaattaaatgtcactcttaagaggaaaagacacattaaacaaattagtaccatcaattttcccc |
450 |
Q |
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| T |
13151995 |
taattatataattaagtgtcaccctttcttaaaacaaaattaaatgtcactcttaagaggaaaagacacattaaacaaattagtaccatcaattttcccc |
13152094 |
T |
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| Q |
451 |
tgaaatccaaatggatactttttctgtttattaggataaaacactccaaaatgtttctctaactcaggattcttctgattctcatcaaacaatccaaata |
550 |
Q |
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| T |
13152095 |
tgaaatccaaatggatactttttctgtttattaggataaaacactccaaaatgtttctctaactcaggattcttctgattctcatcaaacaatccaaata |
13152194 |
T |
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| Q |
551 |
tataagtctcaataggtccagacctcattggtgtcccacctttaacatgcctaatcaaattatcaagataaactcttgcattatcataagtagttgcaaa |
650 |
Q |
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| T |
13152195 |
tataagtctcaataggtccagacctcattggtgtcccacctttaacatgcctaatcaaattatcaagataaactcttgcattatcataagtagttgcaaa |
13152294 |
T |
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| Q |
651 |
tccaccatctgaaggccaaccactctcagacacaacaaccttaacaaaaccaattccag |
709 |
Q |
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| T |
13152295 |
tccaccatctgaaggccaaccactctcagacacaacaaccttaacaaaaccaattccag |
13152353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 448 - 709
Target Start/End: Original strand, 13145325 - 13145589
Alignment:
| Q |
448 |
ccctgaaatccaaatggatactttttctgtttatta---ggataaaacactccaaaatgtttctctaactcaggattcttctgattctcatcaaacaatc |
544 |
Q |
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| T |
13145325 |
ccctaaaatccaaatggatactttttctgtttattattaggattaaatactccaaaatgtttctccaactcaggattcttcttattctcatcaaacaacc |
13145424 |
T |
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| Q |
545 |
caaatatataagtctcaataggtccagacctcattggtgtcccacctttaacatgcctaatcaaattatcaagataaactcttgcattatcataagtagt |
644 |
Q |
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| T |
13145425 |
caaatatataagtctcaataggtccagacctcattggtgttccaccattaacatgcctaatcaaattatcaagataaactcttgcattatcataagtagc |
13145524 |
T |
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| Q |
645 |
tgcaaatccaccatctgaaggccaaccactctcagacacaacaaccttaacaaaaccaattccag |
709 |
Q |
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| T |
13145525 |
tgcaaatccaccatctgaaggccaaccactctcagacacaacaaccttaacaaaaccaattccag |
13145589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 13151623 - 13151758
Alignment:
| Q |
8 |
gtaccgtcattgcgctgctcaacgaaagcttccgcctaaacacctttctagaagactttggatacaaggagccaattcaaacccttggtgacccatcggc |
107 |
Q |
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| T |
13151623 |
gtacggtcattgcgctgctcaacaaaagcttccgccttaacacctttctagaagactttggatacaagaagccaattcaaacccttggcgacccatcgac |
13151722 |
T |
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| Q |
108 |
tttgacaccattgttgagtcacgttatctttttaag |
143 |
Q |
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| T |
13151723 |
tttgacaccattgttgagtcacattatctttttaag |
13151758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 15 - 104
Target Start/End: Original strand, 13154637 - 13154726
Alignment:
| Q |
15 |
cattgcgctgctcaacgaaagcttccgcctaaacacctttctagaagactttggatacaaggagccaattcaaacccttggtgacccatc |
104 |
Q |
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| T |
13154637 |
cattgcgctgctcaatgaaagcctccacttgaacacctttctagaagacttttgatataaggagccaattcaaatccttgatgaaccatc |
13154726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 453 - 541
Target Start/End: Complemental strand, 13161141 - 13161053
Alignment:
| Q |
453 |
aaatccaaatggatactttttctgtttattaggataaaacactccaaaatgtttctctaactcaggattcttctgattctcatcaaaca |
541 |
Q |
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| T |
13161141 |
aaatccaaatgggtatttcttttgtttattaggataaaacactccaaaatgtttctccaattctggactcttttggttctcatcaaaca |
13161053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 13145198 - 13145246
Alignment:
| Q |
279 |
tattatatgagttgtggttacaggatcaaaacaagacaaccaatttatt |
327 |
Q |
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| T |
13145198 |
tattatatgagtcgtgattacaagatcaaaacaagacaaccattttatt |
13145246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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