View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1637-INSERTION-5 (Length: 421)

Name: NF1637-INSERTION-5
Description: NF1637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1637-INSERTION-5
NF1637-INSERTION-5
[»] chr8 (27 HSPs)
chr8 (21-420)||(2833186-2833598)
chr8 (266-345)||(2840236-2840315)
chr8 (266-345)||(2844923-2845002)
chr8 (7-85)||(2790983-2791060)
chr8 (333-415)||(2840141-2840223)
chr8 (333-415)||(2844828-2844910)
chr8 (266-318)||(10114394-10114446)
chr8 (267-319)||(40859833-40859885)
chr8 (260-327)||(4389839-4389905)
chr8 (268-322)||(10120657-10120711)
chr8 (260-342)||(37353356-37353438)
chr8 (135-183)||(2487968-2488016)
chr8 (260-316)||(12972763-12972818)
chr8 (267-327)||(43730672-43730732)
chr8 (260-315)||(14482110-14482164)
chr8 (260-327)||(26215392-26215458)
chr8 (287-322)||(40637438-40637473)
chr8 (267-313)||(6918941-6918986)
chr8 (288-322)||(21119072-21119106)
chr8 (268-314)||(28769455-28769500)
chr8 (268-322)||(37444531-37444585)
chr8 (261-314)||(3645925-3645977)
chr8 (267-344)||(29417818-29417894)
chr8 (293-326)||(43569047-43569080)
chr8 (266-314)||(10727106-10727153)
chr8 (134-182)||(27119888-27119936)
chr8 (296-344)||(44426531-44426579)
[»] chr5 (37 HSPs)
chr5 (266-322)||(39105364-39105420)
chr5 (260-342)||(42573887-42573969)
chr5 (266-322)||(9202862-9202918)
chr5 (260-316)||(20982243-20982298)
chr5 (260-327)||(10771986-10772053)
chr5 (260-323)||(17258991-17259054)
chr5 (267-322)||(28776875-28776930)
chr5 (266-319)||(1465133-1465186)
chr5 (260-327)||(14675008-14675075)
chr5 (266-321)||(42582813-42582868)
chr5 (280-346)||(8089675-8089741)
chr5 (266-316)||(26516205-26516254)
chr5 (260-342)||(30291141-30291223)
chr5 (296-342)||(42849860-42849906)
chr5 (266-339)||(19460500-19460572)
chr5 (273-342)||(26796343-26796411)
chr5 (273-342)||(26799861-26799929)
chr5 (303-352)||(32849080-32849129)
chr5 (279-319)||(2568554-2568594)
chr5 (264-316)||(31687932-31687983)
chr5 (271-319)||(42646548-42646596)
chr5 (271-322)||(3735620-3735671)
chr5 (287-342)||(34590363-34590418)
chr5 (267-342)||(38104979-38105053)
chr5 (298-345)||(40731171-40731218)
chr5 (284-342)||(24030544-24030601)
chr5 (266-314)||(16945095-16945144)
chr5 (271-344)||(25460961-25461033)
chr5 (273-342)||(26807411-26807479)
chr5 (266-322)||(39247999-39248056)
chr5 (266-327)||(41059615-41059676)
chr5 (261-346)||(41819488-41819573)
chr5 (267-300)||(42099975-42100008)
chr5 (266-303)||(42569094-42569131)
chr5 (290-322)||(3569097-3569129)
chr5 (271-319)||(31051791-31051839)
chr5 (265-317)||(42569668-42569719)
[»] chr6 (12 HSPs)
chr6 (266-322)||(264271-264327)
chr6 (261-346)||(31686553-31686638)
chr6 (267-322)||(35069452-35069507)
chr6 (271-322)||(34430606-34430657)
chr6 (261-315)||(2514610-2514663)
chr6 (107-180)||(27857423-27857496)
chr6 (208-247)||(2117399-2117438)
chr6 (206-277)||(8035181-8035251)
chr6 (263-300)||(1669898-1669935)
chr6 (303-352)||(7946024-7946073)
chr6 (277-322)||(32014117-32014162)
chr6 (260-328)||(6654509-6654577)
[»] chr3 (30 HSPs)
chr3 (280-344)||(5435710-5435774)
chr3 (266-322)||(402655-402711)
chr3 (260-322)||(35127479-35127541)
chr3 (271-322)||(1508710-1508761)
chr3 (266-320)||(28240228-28240282)
chr3 (273-342)||(10216872-10216940)
chr3 (273-342)||(10220391-10220459)
chr3 (261-342)||(30574021-30574102)
chr3 (287-344)||(30956771-30956827)
chr3 (287-344)||(30972583-30972639)
chr3 (203-243)||(237397-237437)
chr3 (266-326)||(36101465-36101524)
chr3 (287-323)||(40665328-40665364)
chr3 (290-322)||(46886835-46886867)
chr3 (262-322)||(47249578-47249638)
chr3 (279-342)||(27896309-27896372)
chr3 (271-322)||(31365401-31365452)
chr3 (271-342)||(35959585-35959655)
chr3 (260-315)||(41028959-41029013)
chr3 (288-327)||(55113559-55113598)
chr3 (261-335)||(23815941-23816014)
chr3 (203-241)||(30322050-30322088)
chr3 (260-346)||(36887399-36887484)
chr3 (273-342)||(9995855-9995923)
chr3 (273-342)||(10105724-10105792)
chr3 (146-183)||(11492525-11492562)
chr3 (287-320)||(12833886-12833919)
chr3 (274-342)||(10226484-10226551)
chr3 (267-315)||(28842972-28843019)
chr3 (267-319)||(43062599-43062651)
[»] chr1 (33 HSPs)
chr1 (266-342)||(5894277-5894352)
chr1 (296-348)||(4920894-4920946)
chr1 (267-322)||(47498958-47499013)
chr1 (267-315)||(15942240-15942288)
chr1 (262-322)||(38116295-38116355)
chr1 (266-322)||(47885122-47885177)
chr1 (267-318)||(10744212-10744263)
chr1 (106-184)||(4757399-4757477)
chr1 (271-342)||(35058873-35058946)
chr1 (271-348)||(51688570-51688646)
chr1 (266-322)||(27146362-27146418)
chr1 (282-322)||(27820470-27820510)
chr1 (290-346)||(48064185-48064241)
chr1 (260-327)||(4549761-4549828)
chr1 (271-322)||(33541837-33541888)
chr1 (260-327)||(37593777-37593844)
chr1 (268-327)||(37841893-37841952)
chr1 (279-342)||(41505558-41505620)
chr1 (266-308)||(4256156-4256198)
chr1 (296-342)||(33527275-33527321)
chr1 (296-342)||(34619506-34619552)
chr1 (134-180)||(38578593-38578639)
chr1 (271-320)||(17834152-17834201)
chr1 (287-320)||(27976372-27976405)
chr1 (125-182)||(29929571-29929628)
chr1 (203-243)||(5924055-5924095)
chr1 (266-322)||(9572222-9572278)
chr1 (287-327)||(11137789-11137829)
chr1 (271-318)||(14385892-14385937)
chr1 (288-340)||(24417817-24417869)
chr1 (279-319)||(24552477-24552517)
chr1 (286-342)||(31517871-31517927)
chr1 (288-328)||(38578422-38578462)
[»] chr7 (17 HSPs)
chr7 (271-322)||(21568757-21568808)
chr7 (267-342)||(25130224-25130299)
chr7 (266-321)||(44777096-44777151)
chr7 (105-182)||(11700513-11700590)
chr7 (270-327)||(48131244-48131300)
chr7 (267-327)||(7612354-7612414)
chr7 (266-322)||(47795857-47795913)
chr7 (271-342)||(33128628-33128698)
chr7 (261-315)||(1431417-1431470)
chr7 (284-322)||(20189150-20189188)
chr7 (261-311)||(27389295-27389344)
chr7 (280-322)||(33678682-33678724)
chr7 (273-322)||(3308383-3308432)
chr7 (261-322)||(33552930-33552991)
chr7 (266-314)||(37832253-37832302)
chr7 (270-322)||(33672978-33673030)
chr7 (262-322)||(46139842-46139902)
[»] chr4 (27 HSPs)
chr4 (266-329)||(55084588-55084651)
chr4 (266-354)||(2987057-2987145)
chr4 (260-328)||(42641741-42641809)
chr4 (267-318)||(21731768-21731819)
chr4 (267-322)||(44863077-44863132)
chr4 (279-342)||(47771876-47771938)
chr4 (260-346)||(50298407-50298493)
chr4 (261-322)||(11389426-11389487)
chr4 (278-342)||(17823019-17823084)
chr4 (266-327)||(26883890-26883951)
chr4 (294-342)||(28615199-28615247)
chr4 (108-175)||(18628486-18628553)
chr4 (267-322)||(30066881-30066936)
chr4 (267-322)||(35571947-35572002)
chr4 (268-327)||(45516652-45516711)
chr4 (260-318)||(23503463-23503521)
chr4 (260-342)||(26520337-26520419)
chr4 (260-317)||(17883973-17884030)
chr4 (293-342)||(39178376-39178425)
chr4 (267-344)||(50662847-50662923)
chr4 (144-180)||(2236949-2236985)
chr4 (260-308)||(2980579-2980626)
chr4 (260-308)||(6364063-6364111)
chr4 (261-321)||(17751231-17751291)
chr4 (262-318)||(23277317-23277373)
chr4 (266-342)||(45104521-45104596)
chr4 (267-315)||(46796926-46796973)
[»] chr2 (23 HSPs)
chr2 (266-343)||(2416193-2416269)
chr2 (225-262)||(43299454-43299491)
chr2 (259-327)||(32364831-32364899)
chr2 (287-342)||(1633691-1633745)
chr2 (273-322)||(44589935-44589984)
chr2 (282-342)||(36534669-36534728)
chr2 (144-183)||(579417-579456)
chr2 (287-322)||(5599195-5599230)
chr2 (287-322)||(12795682-12795717)
chr2 (287-342)||(15757811-15757865)
chr2 (271-322)||(41407191-41407242)
chr2 (272-318)||(3311938-3311984)
chr2 (266-318)||(3611129-3611182)
chr2 (260-341)||(39567784-39567865)
chr2 (273-322)||(39659639-39659688)
chr2 (266-315)||(43965244-43965292)
chr2 (266-342)||(626325-626400)
chr2 (135-183)||(1801730-1801778)
chr2 (135-183)||(5902509-5902557)
chr2 (292-328)||(21828156-21828192)
chr2 (274-322)||(26626776-26626824)
chr2 (134-182)||(32837386-32837434)
chr2 (266-342)||(41880617-41880692)
[»] scaffold0092 (1 HSPs)
scaffold0092 (208-244)||(40230-40266)
[»] scaffold0024 (1 HSPs)
scaffold0024 (260-316)||(27483-27538)


Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 21 - 420
Target Start/End: Original strand, 2833186 - 2833598
Alignment:
Q  21 taactgatctaacatagagtcaacataataaacagcacaccaaagtatatttataatagtaaaaatgtcagcaaccat-------------aaattcgct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||    
T  2833186 taactgatctaacatagagtcaacataataaacagcacaccaaagtatatttataatagtaaaaatgtcagcaaccattaaaggcctccataaattcgct 2833285  T
Q  108 tattagagcttatccactgacacagatacttgtgatactgtttggcataacttatgaaaacaacttatcacatgtttatgagctctttcaccttattccg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2833286 tattagagcttatccactgacacagatacttgtgatactgtttggcataacttatgaaaacaacttatcacatgtttatgagctctttcaccttattccg 2833385  T
Q  208 taagctctttagggtaacttatgaaaacaacttatagatttatacaaaaacagttattgaaatagcttattcataagcacttatcatgataagcacttat 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2833386 taagctctttagggtaacttatgaaaacaacttatagatttatacaaaaacagttattgaaatagcttattcataagcacttatcatgataagcacttat 2833485  T
Q  308 gctataagctgcaaaataagcagcttatccaaacatggcttaaatctttgatacctatttcaatcctcaaatatttatcgagatttcactaaaatcttga 407  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2833486 gctataagctgcaaaataagcagtttatccaaacatggcttaaatctttgatacctatttcaatcctcaaatatttatcgagatttcactaaaatcttga 2833585  T
Q  408 ccaggatttccta 420  Q
    |||||||||||||    
T  2833586 ccaggatttccta 2833598  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 266 - 345
Target Start/End: Complemental strand, 2840315 - 2840236
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaacatgg 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||    
T  2840315 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagttgtttatacaaacatgg 2840236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 266 - 345
Target Start/End: Complemental strand, 2845002 - 2844923
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaacatgg 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||    
T  2845002 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagttgtttatacaaacatgg 2844923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 2790983 - 2791060
Alignment:
Q  7 actactaactgatataactgatctaacatagagtcaacataataaacagcacaccaaagtatatttataatagtaaaaa 85  Q
    ||||||||||||||||||||| |||||||| || |||||||||||||| | ||||||||||| ||||||||||||||||    
T  2790983 actactaactgatataactgacctaacataaagacaacataataaaca-cccaccaaagtatttttataatagtaaaaa 2791060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 333 - 415
Target Start/End: Complemental strand, 2840223 - 2840141
Alignment:
Q  333 tatccaaacatggcttaaatctttgatacctatttcaatcctcaaatatttatcgagatttcactaaaatcttgaccaggatt 415  Q
    ||||| |||||||||||||| | |||||||||| |||||||||||||||||   |||||||| ||||||||||||||||||||    
T  2840223 tatcctaacatggcttaaatttctgatacctatatcaatcctcaaatattttatgagatttctctaaaatcttgaccaggatt 2840141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 333 - 415
Target Start/End: Complemental strand, 2844910 - 2844828
Alignment:
Q  333 tatccaaacatggcttaaatctttgatacctatttcaatcctcaaatatttatcgagatttcactaaaatcttgaccaggatt 415  Q
    ||||| |||||||||||||| | |||||||||| |||||||||||||||||   |||||||| ||||||||||||||||||||    
T  2844910 tatcctaacatggcttaaatttctgatacctatatcaatcctcaaatattttatgagatttctctaaaatcttgaccaggatt 2844828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 318
Target Start/End: Complemental strand, 10114446 - 10114394
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctg 318  Q
    |||||||||||| |||||||||||||||| |||| ||||||||||||||||||    
T  10114446 gaaatagcttatacataagcacttatcatcataaccacttatgctataagctg 10114394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 267 - 319
Target Start/End: Original strand, 40859833 - 40859885
Alignment:
Q  267 aaatagcttattcataagcacttatcatgataagcacttatgctataagctgc 319  Q
    ||||||||||| ||||||| ||||||||||||||||||| |||||||||||||    
T  40859833 aaatagcttatacataagcgcttatcatgataagcacttgtgctataagctgc 40859885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 4389905 - 4389839
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataag 327  Q
    ||||| ||||||||||||||||| |  || || ||||||||||||| |||||||||||||||||||||    
T  4389905 gttatagaaatagcttattcatatgtgctcat-atgataagcacttctgctataagctgcaaaataag 4389839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 322
Target Start/End: Complemental strand, 10120711 - 10120657
Alignment:
Q  268 aatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||||||||  ||||||||||||||||| || | ||||||||||||||||||||    
T  10120711 aatagcttatagataagcacttatcatgagaaacgcttatgctataagctgcaaa 10120657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 342
Target Start/End: Original strand, 37353356 - 37353438
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||| ||||||| || | ||||||| |||||||| ||||||| |||||||||||||||||||  |||  | |||||||||||    
T  37353356 gttatagaaatagtttgtacataagcgcttatcatcataagcatttatgctataagctgcaaatcaagttgtttatccaaaca 37353438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 2487968 - 2488016
Alignment:
Q  135 acttgtgatactgtttggcataacttatgaaaacaacttatcacatgtt 183  Q
    |||||||| ||||||||| | |||||||||||||||||||| |||||||    
T  2487968 acttgtgagactgtttgggagaacttatgaaaacaacttataacatgtt 2488016  T

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Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 316
Target Start/End: Complemental strand, 12972818 - 12972763
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagc 316  Q
    |||||||||||||||||| ||||||||||||| |||||||   ||||||||||||||    
T  12972818 gttattgaaatagcttatacataagcacttat-atgataaatgcttatgctataagc 12972763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 327
Target Start/End: Complemental strand, 43730732 - 43730672
Alignment:
Q  267 aaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataag 327  Q
    ||||||||||| |||||| |||||||||||||| |  |||||||| |||||||||| ||||    
T  43730732 aaatagcttatacataagtacttatcatgataaacttttatgctaaaagctgcaaattaag 43730672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 315
Target Start/End: Complemental strand, 14482164 - 14482110
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataag 315  Q
    ||||| ||||||| |||| ||||||||||||| |||||||||||| ||||||||||    
T  14482164 gttatagaaatagtttatacataagcacttat-atgataagcactaatgctataag 14482110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 26215458 - 26215392
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataag 327  Q
    ||||| |||||||||||| ||||||| |||||||| |||||| ||  |||||||||||| ||||||||    
T  26215458 gttatagaaatagcttatacataagcgcttatcattataagcgctcgtgctataagctg-aaaataag 26215392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 322
Target Start/End: Original strand, 40637438 - 40637473
Alignment:
Q  287 cttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||| ||||||||||||||||||||||||||||||    
T  40637438 cttattatgataagcacttatgctataagctgcaaa 40637473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 313
Target Start/End: Complemental strand, 6918986 - 6918941
Alignment:
Q  267 aaatagcttattcataagcacttatcatgataagcacttatgctata 313  Q
    ||||||||||| ||||||||||||| ||||||| |||||||||||||    
T  6918986 aaatagcttatacataagcacttat-atgataaacacttatgctata 6918941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 322
Target Start/End: Original strand, 21119072 - 21119106
Alignment:
Q  288 ttatcatgataagcacttatgctataagctgcaaa 322  Q
    |||| ||||||||||||||||||||||||||||||    
T  21119072 ttattatgataagcacttatgctataagctgcaaa 21119106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 314
Target Start/End: Original strand, 28769455 - 28769500
Alignment:
Q  268 aatagcttattcataagcacttatcatgataagcacttatgctataa 314  Q
    |||||||||| |||||||| |||| ||||||||||||||||||||||    
T  28769455 aatagcttatacataagcatttat-atgataagcacttatgctataa 28769500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 322
Target Start/End: Original strand, 37444531 - 37444585
Alignment:
Q  268 aatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    |||||||||| ||||||| ||||||||||||||  |||||||| ||| |||||||    
T  37444531 aatagcttatacataagcgcttatcatgataagtgcttatgctttaacctgcaaa 37444585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 314
Target Start/End: Original strand, 3645925 - 3645977
Alignment:
Q  261 ttattgaaatagcttattcataagcacttatcatgataagcacttatgctataa 314  Q
    |||| |||||||||||| || |||||||||| ||||||| ||||||||||||||    
T  3645925 ttatagaaatagcttatacacaagcacttat-atgataaacacttatgctataa 3645977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 344
Target Start/End: Original strand, 29417818 - 29417894
Alignment:
Q  267 aaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaacatg 344  Q
    ||||||||||| || ||||||||||||| |||||  ||| ||||| ||||||||||||||   | |||||||||||||    
T  29417818 aaatagcttatacaaaagcacttatcat-ataagtgcttgtgctaaaagctgcaaaataacatgtttatccaaacatg 29417894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 326
Target Start/End: Complemental strand, 43569080 - 43569047
Alignment:
Q  293 atgataagcacttatgctataagctgcaaaataa 326  Q
    |||||||| |||||||||||||||||||||||||    
T  43569080 atgataagtacttatgctataagctgcaaaataa 43569047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 10727153 - 10727106
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataa 314  Q
    |||||||||||| ||||||||||||| ||||| | ||||||||||||||    
T  10727153 gaaatagcttatgcataagcacttat-atgatgaacacttatgctataa 10727106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 27119888 - 27119936
Alignment:
Q  134 tacttgtgatactgtttggcataacttatgaaaacaacttatcacatgt 182  Q
    ||||||||| ||||||||| ||||||||||||||| ||| || ||||||    
T  27119888 tacttgtgagactgtttggaataacttatgaaaaccactaatgacatgt 27119936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 344
Target Start/End: Original strand, 44426531 - 44426579
Alignment:
Q  296 ataagcacttatgctataagctgcaaaataagcagcttatccaaacatg 344  Q
    ||||||||||||||||||||||||||| ||||  | ||| |||||||||    
T  44426531 ataagcacttatgctataagctgcaaattaagttgtttacccaaacatg 44426579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 39105420 - 39105364
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  39105420 gaaatagcttatacataagcgcttatcatgataagcacttatgctataagctgcaaa 39105364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 342
Target Start/End: Original strand, 42573887 - 42573969
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||| |||||||||||| ||||||| ||||||||||||||| || | ||||||||||||||| ||||| | |||||||||||    
T  42573887 gttatagaaatagcttatacataagcgcttatcatgataagcgctcaggctataagctgcaaattaagctgtttatccaaaca 42573969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 9202862 - 9202918
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||||||||||  |||||||||||||||||||| ||||| ||||||||||||||||    
T  9202862 gaaatagcttatatataagcacttatcatgataaacacttgtgctataagctgcaaa 9202918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 260 - 316
Target Start/End: Original strand, 20982243 - 20982298
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagc 316  Q
    ||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  20982243 gttatagaaatagcttatacataagcacttat-atgataagcacttatgctataagc 20982298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 10771986 - 10772053
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataag 327  Q
    ||||| |||||||||||| |||| |   ||||||||||||||||||||||||||||||||||| ||||    
T  10771986 gttatagaaatagcttatacatatgtgtttatcatgataagcacttatgctataagctgcaaattaag 10772053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 260 - 323
Target Start/End: Original strand, 17258991 - 17259054
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaa 323  Q
    ||||| ||||| ||||||||||||||||||| |||||||||   ||||||||||||||||||||    
T  17258991 gttatggaaatggcttattcataagcacttaccatgataagggtttatgctataagctgcaaaa 17259054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 28776930 - 28776875
Alignment:
Q  267 aaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||||||||| ||||||||||||||||||||||  |||| |||||||||||||||    
T  28776930 aaatagcttatacataagcacttatcatgataagtgcttaggctataagctgcaaa 28776875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 319
Target Start/End: Original strand, 1465133 - 1465186
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgc 319  Q
    |||||||||||| ||||||| |||||| ||||||||||||||||||||| ||||    
T  1465133 gaaatagcttatacataagcgcttatcttgataagcacttatgctataaactgc 1465186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 14675008 - 14675075
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataag 327  Q
    ||||| |||||||||| | |||||||||||||||||||||  | |||||| |||||||||||| ||||    
T  14675008 gttatagaaatagcttctacataagcacttatcatgataactatttatgccataagctgcaaattaag 14675075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 321
Target Start/End: Complemental strand, 42582868 - 42582813
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaa 321  Q
    |||||||||||| ||||||| ||||| ||||||| | |||||||||||||||||||    
T  42582868 gaaatagcttatacataagcgcttattatgataaacgcttatgctataagctgcaa 42582813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 346
Target Start/End: Complemental strand, 8089741 - 8089675
Alignment:
Q  280 ataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaacatggc 346  Q
    |||||| ||||||||||||| |||||||||||| |||| |||| ||||  | |||||||||||||||    
T  8089741 ataagcgcttatcatgataaacacttatgctatgagctacaaattaagttgtttatccaaacatggc 8089675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 26516254 - 26516205
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagc 316  Q
    |||||||||||| ||||||||||||| ||||||||| ||||||||||||||    
T  26516254 gaaatagcttatacataagcacttat-atgataagcgcttatgctataagc 26516205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 30291223 - 30291141
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||| ||||||| |||| |||||||  |||||||||||||   ||||||||||||||||||| ||||  | |||||||||||    
T  30291223 gttatggaaataggttatgcataagcgtttatcatgataagtgtttatgctataagctgcaaattaagttggttatccaaaca 30291141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 342
Target Start/End: Complemental strand, 42849906 - 42849860
Alignment:
Q  296 ataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    |||||||||||||| |||||||||||||||| | |||||||||||||    
T  42849906 ataagcacttatgccataagctgcaaaataaacggcttatccaaaca 42849860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 339
Target Start/End: Original strand, 19460500 - 19460572
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaa 339  Q
    ||||||| |||| ||||||  |||||||||||||||| || ||||||||||||| |||||||| | ||||||||    
T  19460500 gaaatagtttatacataagtgcttatcatgataagcatttgtgctataagctgc-aaataagctgtttatccaa 19460572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 342
Target Start/End: Complemental strand, 26796411 - 26796343
Alignment:
Q  273 cttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||||||||||||||||| ||| ||||| ||||||| ||||| |||||||||||  | |||||||||||    
T  26796411 cttattcataagcacttat-atggtaagcgcttatgcgataaggtgcaaaataagttgtttatccaaaca 26796343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 342
Target Start/End: Complemental strand, 26799929 - 26799861
Alignment:
Q  273 cttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||||||||||||||||| ||| ||||| ||||||| ||||| |||||||||||  | |||||||||||    
T  26799929 cttattcataagcacttat-atggtaagcgcttatgcgataaggtgcaaaataagttgtttatccaaaca 26799861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 32849129 - 32849080
Alignment:
Q  303 cttatgctataagctgcaaaataagcagcttatccaaacatggcttaaat 352  Q
    |||||||||||||||||||||||||  ||||||||||||| ||| |||||    
T  32849129 cttatgctataagctgcaaaataagatgcttatccaaacaaggcctaaat 32849080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 2568594 - 2568554
Alignment:
Q  279 cataagcacttatcatgataagcacttatgctataagctgc 319  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  2568594 cataagcacttatcatgataagtacttaagctataagctgc 2568554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 31687983 - 31687932
Alignment:
Q  264 ttgaaatagcttattcataagcacttatcatgataagcacttatgctataagc 316  Q
    |||| ||||||||||||||||||||||| ||||||||| | ||||||||||||    
T  31687983 ttgacatagcttattcataagcacttat-atgataagcgcctatgctataagc 31687932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 42646596 - 42646548
Alignment:
Q  271 agcttattcataagcacttatcatgataagcacttatgctataagctgc 319  Q
    |||||||  |||||| ||||||||||||||||||| |||||||||||||    
T  42646596 agcttatatataagcgcttatcatgataagcacttgtgctataagctgc 42646548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 3735620 - 3735671
Alignment:
Q  271 agcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||||| ||||||| ||||||||||||| | ||| ||||||||||||||||    
T  3735620 agcttatccataagcgcttatcatgataatctcttgtgctataagctgcaaa 3735671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 342
Target Start/End: Original strand, 34590363 - 34590418
Alignment:
Q  287 cttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    |||||||||||||  |||||| |||||||||||||||||||  | |||||||||||    
T  34590363 cttatcatgataaatacttatcctataagctgcaaaataagtcgtttatccaaaca 34590418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 342
Target Start/End: Original strand, 38104979 - 38105053
Alignment:
Q  267 aaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||||||||||||||| | ||||| || |||| | |||| ||||||||||||||||||||  | |||||||||||    
T  38104979 aaatagcttattcataaccgcttat-atcataaacgcttacgctataagctgcaaaataagttgtttatccaaaca 38105053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 345
Target Start/End: Complemental strand, 40731218 - 40731171
Alignment:
Q  298 aagcacttatgctataagctgcaaaataagcagcttatccaaacatgg 345  Q
    |||||||||||||||||||||||||||||   | ||||||||||||||    
T  40731218 aagcacttatgctataagctgcaaaataatttgtttatccaaacatgg 40731171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 342
Target Start/End: Original strand, 24030544 - 24030601
Alignment:
Q  284 gcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    |||||||||||||||||  ||| ||||||||||||| |||||||| | |||||||||||    
T  24030544 gcacttatcatgataagtgcttgtgctataagctgc-aaataagctgtttatccaaaca 24030601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 16945095 - 16945144
Alignment:
Q  266 gaaatagcttattcataagcacttat-catgataagcacttatgctataa 314  Q
    |||||||||||| ||||||||||||| ||||||||||  |||||||||||    
T  16945095 gaaatagcttatacataagcacttatacatgataagcttttatgctataa 16945144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 344
Target Start/End: Complemental strand, 25461033 - 25460961
Alignment:
Q  271 agcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaacatg 344  Q
    |||||||  |||||| ||||||||||||||  |||||||||||||||  || |||||| | |||||||||||||    
T  25461033 agcttatatataagctcttatcatgataagtgcttatgctataagct-aaatataagctgtttatccaaacatg 25460961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 342
Target Start/End: Complemental strand, 26807479 - 26807411
Alignment:
Q  273 cttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||||||||| ||||||| ||| ||||| ||||||| ||||| |||||||||||  | |||||||||||    
T  26807479 cttattcataaacacttat-atggtaagcgcttatgcgataaggtgcaaaataagttgtttatccaaaca 26807411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 39248056 - 39247999
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctat-aagctgcaaa 322  Q
    |||||||||| | ||||||| |||||||| ||||||| ||||||||| ||||||||||    
T  39248056 gaaatagcttttacataagcgcttatcatcataagcaattatgctataaagctgcaaa 39247999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 41059676 - 41059615
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataag 327  Q
    |||||||||||| |||||||| |||||||||||||  |||||  |||||||| |||| ||||    
T  41059676 gaaatagcttatgcataagcaattatcatgataagtgcttatcatataagctacaaattaag 41059615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 346
Target Start/End: Complemental strand, 41819573 - 41819488
Alignment:
Q  261 ttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaacatggc 346  Q
    |||| |||||||||||| || || | || |||||||||||   ||||||||||||||| ||| ||||  ||||| |||||||||||    
T  41819573 ttatagaaatagcttatacaaaaccgctcatcatgataagtgtttatgctataagctgtaaattaagttgcttacccaaacatggc 41819488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 300
Target Start/End: Original strand, 42099975 - 42100008
Alignment:
Q  267 aaatagcttattcataagcacttatcatgataag 300  Q
    ||||||||||| ||||||||||||||||||||||    
T  42099975 aaatagcttatacataagcacttatcatgataag 42100008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 303
Target Start/End: Original strand, 42569094 - 42569131
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcac 303  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  42569094 gaaatagctttttcataagcgcttatcatgataagcac 42569131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 3569097 - 3569129
Alignment:
Q  290 atcatgataagcacttatgctataagctgcaaa 322  Q
    |||||||||||||||| ||||||||||||||||    
T  3569097 atcatgataagcacttgtgctataagctgcaaa 3569129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 319
Target Start/End: Complemental strand, 31051839 - 31051791
Alignment:
Q  271 agcttattcataagcacttatcatgataagcacttatgctataagctgc 319  Q
    |||||||  |||| || |||||||||||||||||| |||||||||||||    
T  31051839 agcttatagataatcatttatcatgataagcacttgtgctataagctgc 31051791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 317
Target Start/End: Complemental strand, 42569719 - 42569668
Alignment:
Q  265 tgaaatagcttattcataagcacttatcatgataagcacttatgctataagct 317  Q
    ||||||||||||| ||||||||| |||| ||||||||| || |||||||||||    
T  42569719 tgaaatagcttatacataagcacatatcgtgataagca-ttgtgctataagct 42569668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 264327 - 264271
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||    
T  264327 gaaatagcttatatataagcacttatcatgataagcacttgtgctataagctgcaaa 264271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 261 - 346
Target Start/End: Original strand, 31686553 - 31686638
Alignment:
Q  261 ttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaacatggc 346  Q
    |||| |||||||||||| ||||||||||||||| ||||||| |||||||| || |||||||| ||||  | ||||| |||||||||    
T  31686553 ttatcgaaatagcttatacataagcacttatcacgataagcgcttatgctgtatgctgcaaattaagttgattatctaaacatggc 31686638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 322
Target Start/End: Complemental strand, 35069507 - 35069452
Alignment:
Q  267 aaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||||||||| ||||||||||||||||||||| | ||| ||||||||||||||||    
T  35069507 aaatagcttatgcataagcacttatcatgataaacgcttgtgctataagctgcaaa 35069452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 322
Target Start/End: Complemental strand, 34430657 - 34430606
Alignment:
Q  271 agcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||||| ||||||| | ||||||||||||||||| ||||||||||||||||    
T  34430657 agcttatacataagcgcctatcatgataagcacttgtgctataagctgcaaa 34430606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 315
Target Start/End: Complemental strand, 2514663 - 2514610
Alignment:
Q  261 ttattgaaatagcttattcataagcacttatcatgataagcacttatgctataag 315  Q
    |||| |||||||||||| |||||||||||| ||||||||||| ||||||||||||    
T  2514663 ttatagaaatagcttatacataagcactta-catgataagcatttatgctataag 2514610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 27857496 - 27857423
Alignment:
Q  107 ttattagagcttatccactgacacagatacttgtgatactgtttggcataacttatgaaaacaacttatcacat 180  Q
    ||||| ||| ||||| ||||||| ||| |||||||| ||||||||| | | |||||||||||||||||| ||||    
T  27857496 ttatttgagtttatctactgacatagacacttgtgaaactgtttgggagagcttatgaaaacaacttatgacat 27857423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 2117438 - 2117399
Alignment:
Q  208 taagctctttagggtaacttatgaaaacaacttatagatt 247  Q
    |||||||| |||| ||||||||||||||||||||||||||    
T  2117438 taagctctctaggataacttatgaaaacaacttatagatt 2117399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 277
Target Start/End: Original strand, 8035181 - 8035251
Alignment:
Q  206 cgtaagctctttagggtaacttatgaaaacaacttatagatttatacaaaaacagttattgaaatagcttat 277  Q
    |||||||| | |||| ||||||||||||||||||| |||  |||||  ||||||||||| ||||||||||||    
T  8035181 cgtaagctttctaggataacttatgaaaacaacttctag-cttatatgaaaacagttatggaaatagcttat 8035251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 300
Target Start/End: Original strand, 1669898 - 1669935
Alignment:
Q  263 attgaaatagcttattcataagcacttatcatgataag 300  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  1669898 attgaaatagcttatacataagcacttataatgataag 1669935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 352
Target Start/End: Original strand, 7946024 - 7946073
Alignment:
Q  303 cttatgctataagctgcaaaataagcagcttatccaaacatggcttaaat 352  Q
    ||||||||||||||| |||||||||  | ||||||||||| |||||||||    
T  7946024 cttatgctataagctacaaaataagttgtttatccaaacagggcttaaat 7946073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 322
Target Start/End: Complemental strand, 32014162 - 32014117
Alignment:
Q  277 ttcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||||||| ||||| ||||||||||||| | ||||||||||||||    
T  32014162 ttcataagcgcttataatgataagcactttttctataagctgcaaa 32014117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 328
Target Start/End: Complemental strand, 6654577 - 6654509
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagc 328  Q
    ||||| |||||| ||||| ||||||| |||||  ||||||||  | ||||||||||||||||| |||||    
T  6654577 gttatagaaataacttatacataagcccttatattgataagcgttaatgctataagctgcaaattaagc 6654509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 344
Target Start/End: Complemental strand, 5435774 - 5435710
Alignment:
Q  280 ataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaacatg 344  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||  || ||||||||||||    
T  5435774 ataagcacttatcatgataagcacttatgctataagctgtaaattaagttgcctatccaaacatg 5435710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 402655 - 402711
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    |||||||||||| ||||||| ||||||||||||||||||| |||||| |||||||||    
T  402655 gaaatagcttatacataagcccttatcatgataagcacttgtgctatgagctgcaaa 402711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 322
Target Start/End: Original strand, 35127479 - 35127541
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||| |||||||| ||| ||||||||||||||||||||||  |||||| |||||||||||||    
T  35127479 gttatagaaatagcctatacataagcacttatcatgataagagcttatggtataagctgcaaa 35127541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 1508710 - 1508761
Alignment:
Q  271 agcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||||| ||||||| ||||||||||||||||||| ||||||||| ||||||    
T  1508710 agcttatacataagcgcttatcatgataagcacttgtgctataagttgcaaa 1508761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 320
Target Start/End: Complemental strand, 28240282 - 28240228
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgca 320  Q
    |||||||||||   |||||||||||||||||||||| ||| ||||||||||||||    
T  28240282 gaaatagcttaaatataagcacttatcatgataagcgcttgtgctataagctgca 28240228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 342
Target Start/End: Complemental strand, 10216940 - 10216872
Alignment:
Q  273 cttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||||||||||||||||| ||| ||||| ||||||| ||||| |||||||||||  | |||||||||||    
T  10216940 cttattcataagcacttat-atggtaagcgcttatgcgataaggtgcaaaataagttgtttatccaaaca 10216872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 342
Target Start/End: Complemental strand, 10220459 - 10220391
Alignment:
Q  273 cttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||||||||||||||||| ||| ||||| ||||||| ||||| |||||||||||  | |||||||||||    
T  10220459 cttattcataagcacttat-atggtaagcgcttatgcgataaggtgcaaaataagttgtttatccaaaca 10220391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 30574021 - 30574102
Alignment:
Q  261 ttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    |||| |||||||||||| ||||||| |||||||||||||   |||||| ||||||||||||| || |  | |||||||||||    
T  30574021 ttatagaaatagcttatacataagcgcttatcatgataaatgcttatgatataagctgcaaattatggtgtttatccaaaca 30574102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 30956771 - 30956827
Alignment:
Q  287 cttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaacatg 344  Q
    ||||||||||||||| ||| ||||||||||||| |||||||| | |||||||||||||    
T  30956771 cttatcatgataagcccttgtgctataagctgc-aaataagctgtttatccaaacatg 30956827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 30972583 - 30972639
Alignment:
Q  287 cttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaacatg 344  Q
    ||||||||||||||| ||| ||||||||||||| |||||||| | |||||||||||||    
T  30972583 cttatcatgataagcccttgtgctataagctgc-aaataagctgtttatccaaacatg 30972639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 237437 - 237397
Alignment:
Q  203 ttccgtaagctctttagggtaacttatgaaaacaacttata 243  Q
    ||||||||||||| |||| ||||||||||||||||||||||    
T  237437 ttccgtaagctctataggataacttatgaaaacaacttata 237397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 326
Target Start/End: Complemental strand, 36101524 - 36101465
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataa 326  Q
    |||||||||||||||||| |||||||  |||||||||  ||||||||||| ||||||||||    
T  36101524 gaaatagcttattcataaccacttat-ttgataagcatgtatgctataagttgcaaaataa 36101465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 323
Target Start/End: Complemental strand, 40665364 - 40665328
Alignment:
Q  287 cttatcatgataagcacttatgctataagctgcaaaa 323  Q
    |||||||||||||| ||||||||||||||||||||||    
T  40665364 cttatcatgataagaacttatgctataagctgcaaaa 40665328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 46886835 - 46886867
Alignment:
Q  290 atcatgataagcacttatgctataagctgcaaa 322  Q
    |||||||||||||||||||||||||||||||||    
T  46886835 atcatgataagcacttatgctataagctgcaaa 46886867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 322
Target Start/End: Original strand, 47249578 - 47249638
Alignment:
Q  262 tattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    |||||||||||||||| ||| |||| |||||||||||||  ||| || |||||||||||||    
T  47249578 tattgaaatagcttatacatgagcatttatcatgataagtgcttgtgttataagctgcaaa 47249638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 27896309 - 27896372
Alignment:
Q  279 cataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||| ||||||||||| |||||| |||| |||||||||||||| ||||| | ||||| |||||    
T  27896309 cataaacacttatcatggtaagcatttatactataagctgcaaattaagctgtttatcaaaaca 27896372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 31365401 - 31365452
Alignment:
Q  271 agcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||||| ||||||  ||||||||||||| ||||| ||||||||||||||||    
T  31365401 agcttatacataagtgcttatcatgataatcacttgtgctataagctgcaaa 31365452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 35959585 - 35959655
Alignment:
Q  271 agcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||||| ||||||| ||||||||||||||  ||| || |||||||||| |||||||| | |||||||||||    
T  35959585 agcttatacataagctcttatcatgataagagcttgtgatataagctgc-aaataagctgtttatccaaaca 35959655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 315
Target Start/End: Original strand, 41028959 - 41029013
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataag 315  Q
    ||||| |||||||||||| ||||||||||||| |||||||||| ||| ||||||||    
T  41028959 gttatagaaatagcttatacataagcacttat-atgataagcatttaagctataag 41029013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 327
Target Start/End: Complemental strand, 55113598 - 55113559
Alignment:
Q  288 ttatcatgataagcacttatgctataagctgcaaaataag 327  Q
    |||||||||||| |||||||||||||||||||||| ||||    
T  55113598 ttatcatgataaacacttatgctataagctgcaaattaag 55113559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 335
Target Start/End: Complemental strand, 23816014 - 23815941
Alignment:
Q  261 ttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttat 335  Q
    |||| |||||| ||||| ||||||  |||||||||||||||||||  |||||||| ||| |||||||||| ||||    
T  23816014 ttatagaaataacttatacataagtgcttatcatgataagcactttggctataagatgc-aaataagcagtttat 23815941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 30322050 - 30322088
Alignment:
Q  203 ttccgtaagctctttagggtaacttatgaaaacaactta 241  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  30322050 ttccataagctctttaggataacttatgaaaacaactta 30322088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 346
Target Start/End: Complemental strand, 36887484 - 36887399
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaacatggc 346  Q
    ||||| |||||| ||||| ||| ||| | ||||| ||||||||||||| ||||||||| |||| ||||  | |||||||||||||||    
T  36887484 gttatagaaataacttatacattagc-catatcacgataagcacttatcctataagctacaaattaagatgtttatccaaacatggc 36887399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 342
Target Start/End: Complemental strand, 9995923 - 9995855
Alignment:
Q  273 cttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||||||||| ||||||| ||| ||||| ||||||| ||||| |||||||||||  | |||||||||||    
T  9995923 cttattcataaccacttat-atggtaagcgcttatgcgataaggtgcaaaataagttgtttatccaaaca 9995855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 342
Target Start/End: Complemental strand, 10105792 - 10105724
Alignment:
Q  273 cttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||||||||||||||||| ||| ||||| ||||||  ||||| |||||||||||  | |||||||||||    
T  10105792 cttattcataagcacttat-atggtaagcgcttatgagataaggtgcaaaataagttgtttatccaaaca 10105724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Original strand, 11492525 - 11492562
Alignment:
Q  146 tgtttggcataacttatgaaaacaacttatcacatgtt 183  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  11492525 tgtttggcataatttatgaaaacaacttatgacatgtt 11492562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 320
Target Start/End: Complemental strand, 12833919 - 12833886
Alignment:
Q  287 cttatcatgataagcacttatgctataagctgca 320  Q
    ||||| ||||||||||||||||||||||||||||    
T  12833919 cttattatgataagcacttatgctataagctgca 12833886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 10226551 - 10226484
Alignment:
Q  274 ttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    |||||||||||||||||| ||| ||||| ||||||| ||||| ||||||||| |  | |||||||||||    
T  10226551 ttattcataagcacttat-atggtaagcgcttatgcgataaggtgcaaaataggttgtttatccaaaca 10226484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 315
Target Start/End: Original strand, 28842972 - 28843019
Alignment:
Q  267 aaatagcttattcataagcacttatcatgataagcacttatgctataag 315  Q
    ||||||||||| ||||||||||||| ||||||||| |||||| ||||||    
T  28842972 aaatagcttatacataagcacttat-atgataagcgcttatgatataag 28843019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 319
Target Start/End: Complemental strand, 43062651 - 43062599
Alignment:
Q  267 aaatagcttattcataagcacttatcatgataagcacttatgctataagctgc 319  Q
    |||| |||||| ||||||||||||||| ||||||  ||| |||||||||||||    
T  43062651 aaatggcttatgcataagcacttatcacgataagggcttgtgctataagctgc 43062599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 342
Target Start/End: Original strand, 5894277 - 5894352
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    |||||||||||| ||||||| ||||||||||||||||||| ||||||||||| | |||||||| | |||||||||||    
T  5894277 gaaatagcttatacataagcgcttatcatgataagcacttgtgctataagcttc-aaataagctgtttatccaaaca 5894352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 4920894 - 4920946
Alignment:
Q  296 ataagcacttatgctataagctgcaaaataagcagcttatccaaacatggctt 348  Q
    ||||||||||||||||||||||||||| ||||| | |||||||||||||||||    
T  4920894 ataagcacttatgctataagctgcaaattaagctgtttatccaaacatggctt 4920946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 47498958 - 47499013
Alignment:
Q  267 aaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||||||||| || |||| ||||||||||||||||||| ||||||||||||||||    
T  47498958 aaatagcttatacacaagcgcttatcatgataagcacttgtgctataagctgcaaa 47499013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 15942288 - 15942240
Alignment:
Q  267 aaatagcttattcataagcacttatcatgataagcacttatgctataag 315  Q
    ||||||||||| |||||||||||||||||||||||||||| || |||||    
T  15942288 aaatagcttatacataagcacttatcatgataagcacttaagcaataag 15942240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 322
Target Start/End: Original strand, 38116295 - 38116355
Alignment:
Q  262 tattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    |||||||||||||||| ||||||| ||||||||||||||| | | | ||||||||||||||    
T  38116295 tattgaaatagcttatacataagcgcttatcatgataagcgcatgtactataagctgcaaa 38116355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 47885122 - 47885177
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    |||||| |||||||||||||| |||| ||||||||| ||||||||||||||||||||    
T  47885122 gaaataacttattcataagcaattat-atgataagcgcttatgctataagctgcaaa 47885177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 10744263 - 10744212
Alignment:
Q  267 aaatagcttattcataagcacttatcatgataagcacttatgctataagctg 318  Q
    ||||||||||| ||| ||||||| ||||||||||| ||||||||||||||||    
T  10744263 aaatagcttatacattagcacttgtcatgataagcgcttatgctataagctg 10744212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 4757477 - 4757399
Alignment:
Q  106 cttattagagcttatccactgacacagatacttgtgatactgtttggcataacttatgaaaacaacttatcacatgttt 184  Q
    |||||| ||||||||| | ||||| | | |||||||| ||  ||||||| |||||||||||||||||||| ||||||||    
T  4757477 cttatttgagcttatctattgacataaacacttgtgagaccatttggcagaacttatgaaaacaacttatgacatgttt 4757399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 35058873 - 35058946
Alignment:
Q  271 agcttattcataagcact--tatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||||| |||||||||   ||||||||||||  ||||||||||||| |||||||||||| | |||||||||||    
T  35058873 agcttatacataagcacacctatcatgataagtgcttatgctataagttgcaaaataagctgtttatccaaaca 35058946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 348
Target Start/End: Complemental strand, 51688646 - 51688570
Alignment:
Q  271 agcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaacatggctt 348  Q
    |||||||  |||| ||||||||||||||||||||| | ||||||||||| |||||||  | ||||||||||| |||||    
T  51688646 agcttatatataaacacttatcatgataagcacttgtactataagctgc-aaataagttgtttatccaaacaaggctt 51688570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 27146362 - 27146418
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    |||||| ||||| ||||| | |||||||||||| | |||||||||||||||||||||    
T  27146362 gaaataccttatacataaacgcttatcatgatatgtacttatgctataagctgcaaa 27146418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 27820470 - 27820510
Alignment:
Q  282 aagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  27820470 aagcccttatcatgataagcgcttatgctataagctgcaaa 27820510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 346
Target Start/End: Complemental strand, 48064241 - 48064185
Alignment:
Q  290 atcatgataagcacttatgctataagctgcaaaataagcagcttatccaaacatggc 346  Q
    |||||||||||  |||||||||||||||||||| ||||  | |||||||||||||||    
T  48064241 atcatgataagggcttatgctataagctgcaaattaagttgtttatccaaacatggc 48064185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 327
Target Start/End: Complemental strand, 4549828 - 4549761
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataag 327  Q
    ||||| |||||||||| | |||||||| ||||| || |||||  ||||||||||||||||||| ||||    
T  4549828 gttatagaaatagcttgtacataagcatttatcgtgctaagcgtttatgctataagctgcaaattaag 4549761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 33541837 - 33541888
Alignment:
Q  271 agcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||||| ||||||| ||||||||||||| ||||| |||||||| |||||||    
T  33541837 agcttatacataagcgcttatcatgataaacacttgtgctataaactgcaaa 33541888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 260 - 327
Target Start/End: Original strand, 37593777 - 37593844
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataag 327  Q
    ||||| |||||| ||||| ||||| |||||||| |||||||| ||| |||| ||||||||||| ||||    
T  37593777 gttatagaaataccttatacataaacacttatcgtgataagcgcttttgctttaagctgcaaattaag 37593844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 37841952 - 37841893
Alignment:
Q  268 aatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataag 327  Q
    |||||||||| ||| || |||||||||||||||  |||||||||| ||||||||| ||||    
T  37841952 aatagcttatacatgagtacttatcatgataagtgcttatgctattagctgcaaattaag 37841893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 41505620 - 41505558
Alignment:
Q  279 cataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    |||||||||||||||| ||||||  || ||||||||||||| |||||||| | |||||||||||    
T  41505620 cataagcacttatcatcataagcgtttgtgctataagctgc-aaataagctgtttatccaaaca 41505558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 308
Target Start/End: Original strand, 4256156 - 4256198
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatg 308  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||    
T  4256156 gaaatagcttatacataaacacgtatcatgataagcacttatg 4256198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 342
Target Start/End: Original strand, 33527275 - 33527321
Alignment:
Q  296 ataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    |||||| |||||||| ||||||||||||||||| | |||||||||||    
T  33527275 ataagcgcttatgctctaagctgcaaaataagctgtttatccaaaca 33527321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 342
Target Start/End: Original strand, 34619506 - 34619552
Alignment:
Q  296 ataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||||| ||||||||||||||||||| ||||| | |||||||||||    
T  34619506 ataagcaattatgctataagctgcaaattaagctgtttatccaaaca 34619552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 180
Target Start/End: Complemental strand, 38578639 - 38578593
Alignment:
Q  134 tacttgtgatactgtttggcataacttatgaaaacaacttatcacat 180  Q
    ||||||||| |||||||||  ||||||||||||||||||||| ||||    
T  38578639 tacttgtgagactgtttggactaacttatgaaaacaacttataacat 38578593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 320
Target Start/End: Complemental strand, 17834201 - 17834152
Alignment:
Q  271 agcttattcataagcacttatcatgataagcacttatgctataagctgca 320  Q
    ||||||| ||||| ||||||||||||||||  ||| ||||||||||||||    
T  17834201 agcttatgcataaacacttatcatgataagtgcttgtgctataagctgca 17834152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 320
Target Start/End: Complemental strand, 27976405 - 27976372
Alignment:
Q  287 cttatcatgataagcacttatgctataagctgca 320  Q
    ||||||||||||||||||| ||||||||||||||    
T  27976405 cttatcatgataagcacttgtgctataagctgca 27976372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 29929571 - 29929628
Alignment:
Q  125 tgacacagatacttgtgatactgtttggcataacttatgaaaacaacttatcacatgt 182  Q
    ||||| |||||||||||||||||||| | | | ||||||||||||||| || ||||||    
T  29929571 tgacatagatacttgtgatactgttttggagagcttatgaaaacaactcatgacatgt 29929628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 5924095 - 5924055
Alignment:
Q  203 ttccgtaagctctttagggtaacttatgaaaacaacttata 243  Q
    |||| |||||||| |||| ||||||||||||||||||||||    
T  5924095 ttccataagctctctaggataacttatgaaaacaacttata 5924055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 9572222 - 9572278
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||||||| || ||| ||| || ||||||||| |||||| ||||||||||||||||    
T  9572222 gaaatagctaatacattagcgctgatcatgataggcacttgtgctataagctgcaaa 9572278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 11137829 - 11137789
Alignment:
Q  287 cttatcatgataagcacttatgctataagctgcaaaataag 327  Q
    |||||||||||| ||||||||||||||||||| ||| ||||    
T  11137829 cttatcatgatatgcacttatgctataagctgtaaattaag 11137789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 14385892 - 14385937
Alignment:
Q  271 agcttattcataagcacttatcatgataagcacttatgctataagctg 318  Q
    ||||||| ||||||| ||||||||||||||||||  ||||||||||||    
T  14385892 agcttatacataagctcttatcatgataagcact--tgctataagctg 14385937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 24417817 - 24417869
Alignment:
Q  288 ttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaa 340  Q
    |||||||||||||||||| || ||||||||||||| ||| | | |||||||||    
T  24417817 ttatcatgataagcacttgtgttataagctgcaaattaacctgtttatccaaa 24417869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 319
Target Start/End: Original strand, 24552477 - 24552517
Alignment:
Q  279 cataagcacttatcatgataagcacttatgctataagctgc 319  Q
    ||||||| ||||||||||||| ||||| |||||||||||||    
T  24552477 cataagcgcttatcatgataatcacttgtgctataagctgc 24552517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 31517871 - 31517927
Alignment:
Q  286 acttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||||||||||||   |||||||||||||||||||| |||||   |||||||||||    
T  31517871 acttatcatgataaatgcttatgctataagctgcaaattaagctatttatccaaaca 31517927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 38578462 - 38578422
Alignment:
Q  288 ttatcatgataagcacttatgctataagctgcaaaataagc 328  Q
    |||||||||||||| |||||||||||||||| ||| |||||    
T  38578462 ttatcatgataagcgcttatgctataagctgtaaattaagc 38578422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 21568757 - 21568808
Alignment:
Q  271 agcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||||| ||||||  ||||||||||||||||||||||||||||||||||||    
T  21568757 agcttatacataagtgcttatcatgataagcacttatgctataagctgcaaa 21568808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 342
Target Start/End: Original strand, 25130224 - 25130299
Alignment:
Q  267 aaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||||||||| |||||||||||| |||| |||| | |||||||||||| |||||| ||| | | |||||||||||    
T  25130224 aaatagcttatgcataagcacttaccatggtaagtagttatgctataagttgcaaattaatctgtttatccaaaca 25130299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 321
Target Start/End: Original strand, 44777096 - 44777151
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaa 321  Q
    ||||||| |||| ||||||  ||||||||||||| |||||||||||||||||||||    
T  44777096 gaaatagtttatgcataagtgcttatcatgataaacacttatgctataagctgcaa 44777151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 11700590 - 11700513
Alignment:
Q  105 gcttattagagcttatccactgacacagatacttgtgatactgtttggcataacttatgaaaacaacttatcacatgt 182  Q
    ||||||||||| |||||||||||||   || ||||||| ||| ||||  | || ||||||||||||||||||||||||    
T  11700590 gcttattagagtttatccactgacattaatgcttgtgaaactatttgtgaaaaattatgaaaacaacttatcacatgt 11700513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 327
Target Start/End: Complemental strand, 48131300 - 48131244
Alignment:
Q  270 tagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataag 327  Q
    ||||| || ||||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  48131300 tagctgatacataagcgcttat-atgataagcacttatgctgtaagctgcaaaataag 48131244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 327
Target Start/End: Complemental strand, 7612414 - 7612354
Alignment:
Q  267 aaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataag 327  Q
    ||||||||||| |||| |  ||||||||||||||  |||||||||||||||||||| ||||    
T  7612414 aaatagcttatacatatgagcttatcatgataagtgcttatgctataagctgcaaattaag 7612354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 47795913 - 47795857
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||||| |||| ||||||   |||||||||||||| ||||||||||||||||||||    
T  47795913 gaaataggttatacataagtggttatcatgataagcgcttatgctataagctgcaaa 47795857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 342
Target Start/End: Complemental strand, 33128698 - 33128628
Alignment:
Q  271 agcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||||| ||||||||||||||||||||||   || |||| |||||||| |||||||| | |||||||||||    
T  33128698 agcttatgcataagcacttatcatgataagtgtttgtgctgtaagctgc-aaataagctgtttatccaaaca 33128628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 315
Target Start/End: Original strand, 1431417 - 1431470
Alignment:
Q  261 ttattgaaatagcttattcataagcacttatcatgataagcacttatgctataag 315  Q
    |||| |||||| ||||| ||||| ||||||| |||||||||||||||||||||||    
T  1431417 ttatggaaataacttatacataaacacttat-atgataagcacttatgctataag 1431470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 322
Target Start/End: Original strand, 20189150 - 20189188
Alignment:
Q  284 gcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  20189150 gcacttatcatgataagcacttatgtcataagctgcaaa 20189188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 27389344 - 27389295
Alignment:
Q  261 ttattgaaatagcttattcataagcacttatcatgataagcacttatgcta 311  Q
    |||| |||||||||||| ||||| ||||||| |||||||||||||||||||    
T  27389344 ttatagaaatagcttatacataaacacttat-atgataagcacttatgcta 27389295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 322
Target Start/End: Complemental strand, 33678724 - 33678682
Alignment:
Q  280 ataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    |||||| ||||||||||||||||||| ||||||||| ||||||    
T  33678724 ataagctcttatcatgataagcacttgtgctataagatgcaaa 33678682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 3308383 - 3308432
Alignment:
Q  273 cttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||| |||||||||||||||||| ||| |||| ||||||||||| ||||    
T  3308383 cttatacataagcacttatcatgaaaagtacttgtgctataagctccaaa 3308432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 322
Target Start/End: Original strand, 33552930 - 33552991
Alignment:
Q  261 ttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    |||| |||||||||||| ||||||| ||||||||| ||||  ||| ||| ||||||||||||    
T  33552930 ttatagaaatagcttatacataagcgcttatcatggtaagtgcttgtgcaataagctgcaaa 33552991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 37832253 - 37832302
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgat-aagcacttatgctataa 314  Q
    ||||||| |||| || |||||||||||||||| |||||||||||||||||    
T  37832253 gaaatagtttatacacaagcacttatcatgataaagcacttatgctataa 37832302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 322
Target Start/End: Complemental strand, 33673030 - 33672978
Alignment:
Q  270 tagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    |||||||| ||||||| |||||||| ||||  |||| ||||||||||||||||    
T  33673030 tagcttatacataagcgcttatcataataaatacttgtgctataagctgcaaa 33672978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 322
Target Start/End: Complemental strand, 46139902 - 46139842
Alignment:
Q  262 tattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    |||| |||||||||||  |||| ||||||||||||||||  ||| || |||||||||||||    
T  46139902 tattaaaatagcttatagataatcacttatcatgataagtgcttgtgttataagctgcaaa 46139842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 266 - 329
Target Start/End: Original strand, 55084588 - 55084651
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagca 329  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||||||||| | |||| ||||||    
T  55084588 gaaatagcttatgcataagcgcttatcatgataatcacttatgctataagtttcaaattaagca 55084651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 354
Target Start/End: Complemental strand, 2987145 - 2987057
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaacatggcttaaatct 354  Q
    ||||||||||||  |||||  ||||||||||||| |||||||| ||||||||||||| |||   | |||||||||||||| || |||||    
T  2987145 gaaatagcttataaataagtgcttatcatgataaacacttatgttataagctgcaaattaacttgtttatccaaacatggtttgaatct 2987057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 328
Target Start/End: Original strand, 42641741 - 42641809
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagc 328  Q
    ||||| |||||||||||| ||||| ||||||||||||||||  ||||||  |||||||||||| |||||    
T  42641741 gttatggaaatagcttatacataaacacttatcatgataagtgcttatgtaataagctgcaaattaagc 42641809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 318
Target Start/End: Original strand, 21731768 - 21731819
Alignment:
Q  267 aaatagcttattcataagcacttatcatgataagcacttatgctataagctg 318  Q
    ||||||||||| | ||||||||||||||||||||| ||| ||||||||||||    
T  21731768 aaatagcttatacgtaagcacttatcatgataagcgcttgtgctataagctg 21731819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 44863077 - 44863132
Alignment:
Q  267 aaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||||||||| |||||||||||||||||| |||  ||| ||||||||||||||||    
T  44863077 aaatagcttatgcataagcacttatcatgacaagtgcttgtgctataagctgcaaa 44863132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 47771938 - 47771876
Alignment:
Q  279 cataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||||| ||||| ||||||||| ||||||||||||||| |||||||||| | |||||||||||    
T  47771938 cataagcgcttat-atgataagcgcttatgctataagctccaaaataagctgtttatccaaaca 47771876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 346
Target Start/End: Complemental strand, 50298493 - 50298407
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaacatggc 346  Q
    ||||| |||| | ||||| |||||||| |||||||||||||   |||||||||||||| |||| ||||  | |||||||||||||||    
T  50298493 gttatggaaacaacttatacataagcatttatcatgataagtgtttatgctataagcttcaaattaagttgtttatccaaacatggc 50298407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 11389487 - 11389426
Alignment:
Q  261 ttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    |||| ||||||  |||| |||||||||||||||||||||||||| ||| ||||| |||||||    
T  11389487 ttatagaaataatttatacataagcacttatcatgataagcactcatgatataaactgcaaa 11389426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 17823084 - 17823019
Alignment:
Q  278 tcataagcacttatc-atgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||||||||||||  ||||||||| |||||||||| ||||||||| ||||| | |||||||||||    
T  17823084 tcataagcacttatatatgataagcccttatgctatgagctgcaaattaagctgtttatccaaaca 17823019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 26883951 - 26883890
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataag 327  Q
    |||||| ||||| ||||| ||||||||| ||||||| ||||||||||| |||||||| ||||    
T  26883951 gaaataacttatacataatcacttatcaagataagcgcttatgctatatgctgcaaattaag 26883890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 294 - 342
Target Start/End: Complemental strand, 28615247 - 28615199
Alignment:
Q  294 tgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||||||||||||| ||||||||||||||||||  ||||||| |||||    
T  28615247 tgataagcacttatgttataagctgcaaaataagtggcttatcaaaaca 28615199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 18628486 - 18628553
Alignment:
Q  108 tattagagcttatccactgacacagatacttgtgatactgtttggcataacttatgaaaacaacttat 175  Q
    |||| ||||||||| ||||||| | | |||||||| ||||||||| | | ||||||||||||||||||    
T  18628486 tatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttat 18628553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 30066881 - 30066936
Alignment:
Q  267 aaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||||||||| || |||  |||||||| |||||| ||||||||||||||||||||    
T  30066881 aaatagcttatacacaagtgcttatcattataagcgcttatgctataagctgcaaa 30066936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 35571947 - 35572002
Alignment:
Q  267 aaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||||||||| ||||||  ||| ||||||||| ||||| ||||||||||||||||    
T  35571947 aaatagcttatacataagtgcttgtcatgataaccacttgtgctataagctgcaaa 35572002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 268 - 327
Target Start/End: Complemental strand, 45516711 - 45516652
Alignment:
Q  268 aatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataag 327  Q
    |||| ||||| ||||| || |||||||||||| || ||||||||||||||||||| ||||    
T  45516711 aataacttatacataaacatttatcatgataaacatttatgctataagctgcaaattaag 45516652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 318
Target Start/End: Complemental strand, 23503521 - 23503463
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctg 318  Q
    ||||| ||| ||| |||| ||||||||||||||||||||||| |||||  |||||||||    
T  23503521 gttatagaattagattatacataagcacttatcatgataagcgcttatattataagctg 23503463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 342
Target Start/End: Original strand, 26520337 - 26520419
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||| |||| || |||| ||||||  ||||||||||||| ||||||||||| |||| ||||| ||||  | |||||||||||    
T  26520337 gttatagaaacagtttatacataagtgcttatcatgataaacacttatgctagaagcagcaaattaagttgtttatccaaaca 26520419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 317
Target Start/End: Complemental strand, 17884030 - 17883973
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagct 317  Q
    ||||| |||||||||||  ||| |||||||| |||||||||  |||||||||||||||    
T  17884030 gttatagaaatagcttacacatgagcacttaccatgataagtccttatgctataagct 17883973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 342
Target Start/End: Original strand, 39178376 - 39178425
Alignment:
Q  293 atgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||||||||||||| |||||||||| ||||||||  | |||||||||||    
T  39178376 atgataagcacttatactataagctgtaaaataagttgtttatccaaaca 39178425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 344
Target Start/End: Original strand, 50662847 - 50662923
Alignment:
Q  267 aaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaacatg 344  Q
    ||||||||||| ||||| | || |||||||||||| ||| || |||||||||| |||||||  | |||||||||||||    
T  50662847 aaatagcttatacataaacgctcatcatgataagctcttgtgatataagctgc-aaataagttgtttatccaaacatg 50662923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 2236949 - 2236985
Alignment:
Q  144 actgtttggcataacttatgaaaacaacttatcacat 180  Q
    ||||||||  |||||||||||||||||||||||||||    
T  2236949 actgtttgagataacttatgaaaacaacttatcacat 2236985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 2980579 - 2980626
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatg 308  Q
    ||||| |||||||||||| ||||||||||||| ||||||| ||||||||    
T  2980579 gttatagaaatagcttatacataagcacttat-atgataaacacttatg 2980626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 6364111 - 6364063
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatg 308  Q
    ||||| |||||||||||| ||||||  |||||| |||||||||||||||    
T  6364111 gttatagaaatagcttatacataagtgcttatcttgataagcacttatg 6364063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 321
Target Start/End: Original strand, 17751231 - 17751291
Alignment:
Q  261 ttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaa 321  Q
    |||| ||||||||||||  |||||| |||||||| | |||  |||||||||||||||||||    
T  17751231 ttatagaaatagcttataaataagcgcttatcattacaagtgcttatgctataagctgcaa 17751291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 23277373 - 23277317
Alignment:
Q  262 tattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctg 318  Q
    |||||| ||||||||| ||||||| |||||||| |||||  ||| ||||||||||||    
T  23277373 tattgagatagcttatacataagctcttatcattataagtgcttgtgctataagctg 23277317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 342
Target Start/End: Original strand, 45104521 - 45104596
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||||||||||||| |||  ||||| ||| ||| | ||| ||||||||||||||||||||  || |||||||||||    
T  45104521 gaaatagcttattcacaagtgcttat-atgttaaactcttgtgctataagctgcaaaataattagtttatccaaaca 45104596  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 315
Target Start/End: Complemental strand, 46796973 - 46796926
Alignment:
Q  267 aaatagcttattcataagcacttatcatgataagcacttatgctataag 315  Q
    ||||||||||| |||||| |||||| |||||||||||||||| ||||||    
T  46796973 aaatagcttatgcataagaacttat-atgataagcacttatgttataag 46796926  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 2416269 - 2416193
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaacat 343  Q
    |||||| ||||| |||||||||||| ||||||||| |||| |||||||||||| ||||||||  | ||||||||||||    
T  2416269 gaaataacttatacataagcacttaacatgataagaacttgtgctataagctg-aaaataagttgtttatccaaacat 2416193  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 43299454 - 43299491
Alignment:
Q  225 cttatgaaaacaacttatagatttatacaaaaacagtt 262  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43299454 cttatgaaaacaacttatagatttatacaaaaacagtt 43299491  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 327
Target Start/End: Original strand, 32364831 - 32364899
Alignment:
Q  259 agttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataag 327  Q
    |||||| |||||||||||| ||||||  ||||||||||||||  || |||||||||||| |||||||||    
T  32364831 agttatagaaatagcttatacataagtgcttatcatgataagttctcatgctataagctacaaaataag 32364899  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 342
Target Start/End: Original strand, 1633691 - 1633745
Alignment:
Q  287 cttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||||||||||||||||| ||||||||||||| |||||||| | |||||||||||    
T  1633691 cttatcatgataagcacttctgctataagctgc-aaataagctgtttatccaaaca 1633745  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 44589984 - 44589935
Alignment:
Q  273 cttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||| ||||    
T  44589984 cttatacataagcacttatcatgataagcgcttatactataagctccaaa 44589935  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 342
Target Start/End: Complemental strand, 36534728 - 36534669
Alignment:
Q  282 aagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||||||||||||||||||||||||| ||||| ||| ||||||||  | |||||||||||    
T  36534728 aagcacttatcatgataagcacttatgttataaactg-aaaataagttgtttatccaaaca 36534669  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 579417 - 579456
Alignment:
Q  144 actgtttggcataacttatgaaaacaacttatcacatgtt 183  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  579417 actgtttggaataacttatgaaaacaacttctcacatgtt 579456  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 322
Target Start/End: Original strand, 5599195 - 5599230
Alignment:
Q  287 cttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||| ||||||||||||||||||||||||||||||    
T  5599195 cttattatgataagcacttatgctataagctgcaaa 5599230  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 322
Target Start/End: Complemental strand, 12795717 - 12795682
Alignment:
Q  287 cttatcatgataagcacttatgctataagctgcaaa 322  Q
    |||||||||||||||||||||||||||| |||||||    
T  12795717 cttatcatgataagcacttatgctataaactgcaaa 12795682  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 287 - 342
Target Start/End: Original strand, 15757811 - 15757865
Alignment:
Q  287 cttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    ||||||||||||||| ||| |||||||||||| ||||||||| | |||||||||||    
T  15757811 cttatcatgataagcgcttgtgctataagctg-aaaataagctgtttatccaaaca 15757865  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 271 - 322
Target Start/End: Complemental strand, 41407242 - 41407191
Alignment:
Q  271 agcttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||||| ||||||  ||||||||||||||| ||| ||||||||||||||||    
T  41407242 agcttatacataagtgcttatcatgataagcgcttgtgctataagctgcaaa 41407191  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 3311984 - 3311938
Alignment:
Q  272 gcttattcataagcacttatcatgataagcacttatgctataagctg 318  Q
    |||||| ||||||||||| ||||||||| ||||| ||||||||||||    
T  3311984 gcttatacataagcacttttcatgataatcacttgtgctataagctg 3311938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 318
Target Start/End: Complemental strand, 3611182 - 3611129
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcactta-tgctataagctg 318  Q
    |||||| ||||| |||||||||||||||||| || |||||| ||||||||||||    
T  3611182 gaaataacttatacataagcacttatcatgacaaacacttagtgctataagctg 3611129  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 39567865 - 39567784
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaac 341  Q
    ||||| |||||| ||||| || |||  ||||||||||||||| ||||||| ||||||||  || ||||| | ||||||||||    
T  39567865 gttatagaaatatcttatacacaagtgcttatcatgataagcgcttatgcaataagctgtgaattaagctgtttatccaaac 39567784  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 39659639 - 39659688
Alignment:
Q  273 cttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    ||||| ||||||| |||||||||||||||| || |||| |||||||||||    
T  39659639 cttatacataagcgcttatcatgataagcatttgtgctctaagctgcaaa 39659688  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 315
Target Start/End: Original strand, 43965244 - 43965292
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataag 315  Q
    |||||||||||||||||| ||||||| ||||||||  |||||||||||||    
T  43965244 gaaatagcttattcataaacacttat-atgataagtgcttatgctataag 43965292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 342
Target Start/End: Original strand, 626325 - 626400
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    |||||||||||||||||| |||||| || ||||||| || || | ||||||| |||||||||  | |||||||||||    
T  626325 gaaatagcttattcataaccactta-caagataagcgctaatacaataagctacaaaataagttgtttatccaaaca 626400  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 183
Target Start/End: Complemental strand, 1801778 - 1801730
Alignment:
Q  135 acttgtgatactgtttggcataacttatgaaaacaacttatcacatgtt 183  Q
    |||||||||| ||||||| | |||||||||||||| ||||| |||||||    
T  1801778 acttgtgatattgtttgggagaacttatgaaaacagcttatgacatgtt 1801730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 5902509 - 5902557
Alignment:
Q  135 acttgtgatactgtttggcataacttatgaaaacaacttatcacatgtt 183  Q
    |||||||| ||||||||| | |||||||||||||| ||||| |||||||    
T  5902509 acttgtgagactgtttggaagaacttatgaaaacagcttatgacatgtt 5902557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 21828192 - 21828156
Alignment:
Q  292 catgataagcacttatgctataagctgcaaaataagc 328  Q
    |||||||||  ||||||||||||||||||||||||||    
T  21828192 catgataagggcttatgctataagctgcaaaataagc 21828156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 26626824 - 26626776
Alignment:
Q  274 ttattcataagcacttatcatgataagcacttatgctataagctgcaaa 322  Q
    |||| |||||| | |||||||||||||  ||||||||||||||||||||    
T  26626824 ttatacataagtatttatcatgataagagcttatgctataagctgcaaa 26626776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 32837434 - 32837386
Alignment:
Q  134 tacttgtgatactgtttggcataacttatgaaaacaacttatcacatgt 182  Q
    ||||||||| ||||||||| | |||||||||||||| ||||| ||||||    
T  32837434 tacttgtgagactgtttgggagaacttatgaaaacagcttataacatgt 32837386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 342
Target Start/End: Original strand, 41880617 - 41880692
Alignment:
Q  266 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagcagcttatccaaaca 342  Q
    |||||||  |||| ||||||| ||| |||||||||| ||| |||||||||||||||| ||||  | |||||||||||    
T  41880617 gaaatagtatatttataagcaatta-catgataagcgcttgtgctataagctgcaaagtaagttgtttatccaaaca 41880692  T

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Target: scaffold0092 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 244
Target Start/End: Complemental strand, 40266 - 40230
Alignment:
Q  208 taagctctttagggtaacttatgaaaacaacttatag 244  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  40266 taagctcttcaggataacttatgaaaacaacttatag 40230  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 316
Target Start/End: Complemental strand, 27538 - 27483
Alignment:
Q  260 gttattgaaatagcttattcataagcacttatcatgataagcacttatgctataagc 316  Q
    ||||| |||||| ||||| |||||||||||| |||||||||  ||||||||||||||    
T  27538 gttatagaaataacttatacataagcactta-catgataagagcttatgctataagc 27483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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