View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1637_high_11 (Length: 352)
Name: NF1637_high_11
Description: NF1637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1637_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 9e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 164 - 348
Target Start/End: Complemental strand, 248281 - 248097
Alignment:
| Q |
164 |
gaaatacctagctagctagaagatgtgtaaaaaatacgacccttttataagttgcatttatcattttaacgtatattttgaaatgtaatagtgtagttaa |
263 |
Q |
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| T |
248281 |
gaaatacctagctagctagaagatgtgtaaaaaatacgacccttttataagttgcatttatcattttaacgtatattttgaaatgtaatagtgtagttaa |
248182 |
T |
|
| Q |
264 |
tgtgtttattttatatatgagtgttagtaaagcaccattttgtttatggattatagatatgtccgattttaatttcttctctctc |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
248181 |
tgtgtttattttatatatgagtgttagtaaagcaccattttgtttatggattatagatatgtccgattttaatttcttatctctc |
248097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 248437 - 248333
Alignment:
| Q |
16 |
caatcacctccttttattttaggggaaggggaccccacaacttggattcctcttgtgtgttctctc--tctcgtccatcacctcctaaaccaaaatcctt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
248437 |
caatcacctccttttattttaggggaaggggaccccacaacttggattcctcttgtgtgttctctctctctcgtccatcacctcctaaaccaaaatcctt |
248338 |
T |
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| Q |
114 |
tcttc |
118 |
Q |
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||||| |
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| T |
248337 |
tcttc |
248333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 283
Target Start/End: Complemental strand, 53656054 - 53656022
Alignment:
| Q |
251 |
atagtgtagttaatgtgtttattttatatatga |
283 |
Q |
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| T |
53656054 |
atagtgtagttaatgtgtttattttatgtatga |
53656022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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