View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1637_high_13 (Length: 313)
Name: NF1637_high_13
Description: NF1637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1637_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 46643043 - 46642756
Alignment:
| Q |
18 |
aattatctcattgattgtatccttcatattcgctacactcgatggaatacaaccttgtatatcattgttcgcgaacacaacaacagaagctggcatcttt |
117 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46643043 |
aattatctcgttgattgtatctttcatattcgctacactcgatggaatacaaccttgtatatcattgttcgcgaacacaacaacagaagctggcatcttt |
46642944 |
T |
|
| Q |
118 |
ccgaaattttctggtaaagaaaatttgaatttgttgttgttgatgaaaagtgcatcaagtttgagatcaaagaggcctttaggaacatttccttgaaaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46642943 |
ccgaaattttctggtaaagaaaatttgaatttgttgttgttgatgaaaagtgcatcaagtttgagatcaaagaggcctttaggaacatttccttgaaaat |
46642844 |
T |
|
| Q |
218 |
tgttgtatcttatgtctaagtattttaatgaaggaatgcaaagaacaacctccggaaatgttcctgagaattggttgttgatgatgtc |
305 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
46642843 |
tgttgtatcttatgtccaagtattttaatgaaggaatgcaaagaacaacctccgggaatgttcctgagaattggttgttactgatgtc |
46642756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 12406 times since January 2019
Visitors: 8218