View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1637_high_21 (Length: 216)
Name: NF1637_high_21
Description: NF1637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1637_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 5541540 - 5541741
Alignment:
| Q |
1 |
gcaacacctttatactagctgtcagctcctcataaacaatcacctatccttcatgagagcattctagttgagccaagatatttgcacaaatatttgcttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5541540 |
gcaacacctttatactagctgtcagctcctcataaacaatcacctatccttcatgagagcattctagtttagccaagatatttgcacaaatatttgcttt |
5541639 |
T |
|
| Q |
101 |
tatatataaatgtatatttgcttcaaaggaagtgggaacctatcataatcaataatacagggccgcaattttctcatctcctctttgtggatgacgtcct |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||| |||| |
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| T |
5541640 |
tatgtataaatgtatatttgcttcaaaggaagtgggaacctatcagaatcaataatatcgggccacaattttctcatctcctctttgtagatgacatcct |
5541739 |
T |
|
| Q |
201 |
tc |
202 |
Q |
| |
|
|| |
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|
| T |
5541740 |
tc |
5541741 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 13599764 - 13599843
Alignment:
| Q |
123 |
tcaaaggaagtgggaacctatcataatcaataatacagggccgcaattttctcatctcctctttgtggatgacgtccttc |
202 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||| ||||||||||| | ||||||||||||||| ||||||||||||| |
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| T |
13599764 |
tcaaaggaagggggaacctatcagaatcaataacacagggccgcacctatctcatctcctctttacagatgacgtccttc |
13599843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 49149742 - 49149663
Alignment:
| Q |
123 |
tcaaaggaagtgggaacctatcataatcaataatacagggccgcaattttctcatctcctctttgtggatgacgtccttc |
202 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||| | || || |||||||||||||| |||| ||||||||| |||| |
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|
| T |
49149742 |
tcaaaggaagtgggaacctatcagaatcaataacacatgaccacatttttctcatctcctttttgcggatgacgtacttc |
49149663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 16769929 - 16769855
Alignment:
| Q |
128 |
ggaagtgggaacctatcataatcaataatacagggccgcaattttctcatctcctctttgtggatgacgtccttc |
202 |
Q |
| |
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|||||||||||||||||| ||||||||| ||||| || || ||||||||||||| |||| ||||||||| |||| |
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| T |
16769929 |
ggaagtgggaacctatcagaatcaataacacaggaccacacctttctcatctcctttttgcggatgacgtacttc |
16769855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 23465530 - 23465562
Alignment:
| Q |
123 |
tcaaaggaagtgggaacctatcataatcaataa |
155 |
Q |
| |
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||||||||||||||||||||||| ||||||||| |
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|
| T |
23465530 |
tcaaaggaagtgggaacctatcagaatcaataa |
23465562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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