View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1637_high_7 (Length: 388)
Name: NF1637_high_7
Description: NF1637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1637_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 14 - 387
Target Start/End: Original strand, 46640122 - 46640495
Alignment:
| Q |
14 |
tcatcacaccaatctctaccaccactaaacccaagactcaccaaagcctacatagcactccaagcatggaaacaaacattcacctcagacccaaaaaaca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46640122 |
tcatcacaccaatctctaccaccactaaacccaagactcaccaaagcctacatagcactccaagcatggaaacaaacattcacctcagacccaaaaaaca |
46640221 |
T |
|
| Q |
114 |
ccaccttaaactggtatggcccaaatgtatgcaactacacaggtatcttttgtgcaccgtcactagatgatccttacatcaataccgttgctggtataga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46640222 |
ccaccttaaactggtatggcccaaatgtatgcaactacacaggtatcttttgtgcaccgtcactagatgatccttacatcaataccgttgctggtataga |
46640321 |
T |
|
| Q |
214 |
cataaaccatgcaaacatagcaggttcattaccagaagaacttggtcttttaatagacttagctcttttccacataaactcaaaccgtttctatggttca |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46640322 |
cataaaccatgcaaacatagcaggttcattaccagaagaacttggtcttttaacagacatagctcttttccacataaactcaaaccgtttctatggttca |
46640421 |
T |
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| Q |
314 |
ctccccaatagtttcaaccaccttcaccttctccatgagctagacatcagtaacaaccaattctcaggaacatt |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46640422 |
ctccccaatagtttcaaccaccttcaccttctccatgagctagacatcagtaacaaccaattctcaggaacatt |
46640495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 14 - 387
Target Start/End: Original strand, 46642414 - 46642787
Alignment:
| Q |
14 |
tcatcacaccaatctctaccaccactaaacccaagactcaccaaagcctacatagcactccaagcatggaaacaaacattcacctcagacccaaaaaaca |
113 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642414 |
tcatcacaccaatctctaccaccactaaatccaagactcaccaaagcctacatagcactccaagcatggaaacaaacattcacctcagacccaaaaaaca |
46642513 |
T |
|
| Q |
114 |
ccaccttaaactggtatggcccaaatgtatgcaactacacaggtatcttttgtgcaccgtcactagatgatccttacatcaataccgttgctggtataga |
213 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642514 |
ccactttaaactggtatggcccaaatgtatgcaactacacaggtatcatttgtgcaccgtcactagatgatccttacatcaataccgttgctggtataga |
46642613 |
T |
|
| Q |
214 |
cataaaccatgcaaacatagcaggttcattaccagaagaacttggtcttttaatagacttagctcttttccacataaactcaaaccgtttctatggttca |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642614 |
cataaaccatgcaaacatagcaggttcattaccagaagaacttggtcttttaacagacatagctcttttccacataaactcaaaccgtttctatggttca |
46642713 |
T |
|
| Q |
314 |
ctccccaatagtttcaaccaccttcaccttctccatgagctagacatcagtaacaaccaattctcaggaacatt |
387 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46642714 |
ctccccaatagtttcaaccaccttcaccttctccatgagctagacatcagtaacaaccaattctcaggaacatt |
46642787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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