View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1637_low_1 (Length: 579)
Name: NF1637_low_1
Description: NF1637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1637_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 17 - 568
Target Start/End: Complemental strand, 39663913 - 39663362
Alignment:
| Q |
17 |
catcttgcatgctcccatgtctttctatgacaccactccatcagggaggattctaagcagggtaagattttagggctcaagtattatgtttctaatttaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39663913 |
catcttgcatgctcccatgtctttctatgacaccactccatcagggaggattctaagcagggtaagattttagggctcaagtattatgtttctaatttaa |
39663814 |
T |
|
| Q |
117 |
tgttacatggaataaactaattcatattaatataaacttttacattaatgtcatatttcaaatatgcatgtataattataacnnnnnnnnnnnnnncttg |
216 |
Q |
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||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39663813 |
tgttacatggaataaactaattcatgttgatataaacttttatattaatgtcatatttcaaatatgcatgtataattataactttttttattttttcttg |
39663714 |
T |
|
| Q |
217 |
aacttccacaggcatccactgatcagaccaatgttgatatcttcatccctttgtttatcaattttgttgtggccatgtatattacagtgatcggtatcgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39663713 |
aacttccacaggcatccactgatcagaccaatgttgatatcttcatccctttgtttatcaattttgttgtggccatgtatattacagtgatcagtatcgt |
39663614 |
T |
|
| Q |
317 |
cataatcacatgccagaattcttggccaacggctttcttgctaattcctcttgtttggttgaacatatggtaccgggtatgaatactcacttgtttcaca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39663613 |
cataatcacatgccagaattcttggccaacggctttcttgctaattcctcttgtttggttgaacatatggtaccgggtatgaatactcacttgtttcaca |
39663514 |
T |
|
| Q |
417 |
gattaaatccattataggactctatatctcatgcacattatgctaacaattgatatannnnnnnccttttggttttgcagggttattttctttctacctc |
516 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39663513 |
gattaaatccattgtaggactctatatctcatgcacattatgctaacaattgatatatttttttccttttggttttgcagggttattttctttctacctc |
39663414 |
T |
|
| Q |
517 |
tcgtgaattaacacgtctggattcaattacaaaagcacctgtcattgttcat |
568 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39663413 |
tcgtgaattaacacgtctggattcaattacaaaagcacctgtcattgttcat |
39663362 |
T |
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