View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1637_low_11 (Length: 354)
Name: NF1637_low_11
Description: NF1637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1637_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 40513559 - 40513871
Alignment:
| Q |
16 |
cactggcaaataaaagaacagtggatccacaaacaaagaaactaaacatgctactaaaaatatcttgttccaacgatgtatgagttgtcccctaggatct |
115 |
Q |
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| T |
40513559 |
cactggcaaataaaagaacagtggatccacaaacaaagaaactaaacatgctactaaaaatatcttgttccaacgatgtatgagttgtcccctaggatct |
40513658 |
T |
|
| Q |
116 |
aatactaatactcnnnnnnnaactctttcatagtcttctgagaatactcttgacaatactcttgttttcaaaaacttgttccttgtttcattctttcgag |
215 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513659 |
aatactaatactctttttttaactctttcatagtcttctgagaatactcttgacaatactcttgttttcaaaaacttgttccttgtttcattctttcgag |
40513758 |
T |
|
| Q |
216 |
actttttcgaactttgttcaggtatttgtgttccatcaatgtggtatttcaccttaactccacttgttgtgggaatttttgatatttcaggatcatcttc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513759 |
actttttcgaactttgttcaggtatttgtgttccatcaatgtggtatttcaccttaactccacttgttgtgggaatttttgatatttcaggatcatcttc |
40513858 |
T |
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| Q |
316 |
aaacctatgaaaa |
328 |
Q |
| |
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||||||||||||| |
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| T |
40513859 |
aaacctatgaaaa |
40513871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 21611700 - 21611600
Alignment:
| Q |
19 |
tggcaaataaaagaacagtggatccacaaacaaagaaactaaacatgctactaaaaatatcttgttccaacgatgtatgagttgtcccctaggatctaat |
118 |
Q |
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||||||||||||||| || ||||||||||||||||||| |||||||||||| || || ||||||||||| | || ||| ||||||||||||||| ||| |
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| T |
21611700 |
tggcaaataaaagaagagaggatccacaaacaaagaaattaaacatgctaccaagaaaatcttgttccattggtgaatggtttgtcccctaggatcaaat |
21611601 |
T |
|
| Q |
119 |
a |
119 |
Q |
| |
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| |
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| T |
21611600 |
a |
21611600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 28261605 - 28261535
Alignment:
| Q |
17 |
actggcaaataaaagaacagtggatccacaaacaaagaaactaaacatgctactaaaaatatcttgttcca |
87 |
Q |
| |
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||||| || |||||||| ||||||||||||||||| |||| ||||| ||| |||| ||||| |||||||| |
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| T |
28261605 |
actggtaagtaaaagaaaagtggatccacaaacaatgaaatcaaacaagctgctaagaatattttgttcca |
28261535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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