View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1637_low_13 (Length: 324)
Name: NF1637_low_13
Description: NF1637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1637_low_13 |
 | |
|
| [»] scaffold0591 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0591 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: scaffold0591
Description:
Target: scaffold0591; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 308
Target Start/End: Complemental strand, 5471 - 5176
Alignment:
| Q |
14 |
catcagaattaggagcaaaaa-cctagcaacaggagtcatactataaagtctatgaaaggatccaagtttttgttcatcttgaatgaccaaacactttaa |
112 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
5471 |
catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaaacttttgttcatcttcaatgaccaaacactttaa |
5372 |
T |
|
| Q |
113 |
cacatcatgtgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcagcagagagt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5371 |
cacatcatgtgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagt |
5272 |
T |
|
| Q |
213 |
tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatcggtagcaccatagagctaccaagctgt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5271 |
tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatcggtagcaccatagagctaccaagctgt |
5176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 308
Target Start/End: Original strand, 28625813 - 28626108
Alignment:
| Q |
14 |
catcagaattaggagcaaaa-acctagcaacaggagtcatactataaagtctatgaaaggatccaagtttttgttcatcttgaatgaccaaacactttaa |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
28625813 |
catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaagcttttgttcatcttgaatcaccaaacactttaa |
28625912 |
T |
|
| Q |
113 |
cacatcatgtgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcagcagagagt |
212 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28625913 |
cacatcatgtgatgcaagaagaacaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagt |
28626012 |
T |
|
| Q |
213 |
tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatcggtagcaccatagagctaccaagctgt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28626013 |
tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatcggtagcaccatagagctaccaagctgt |
28626108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 14 - 296
Target Start/End: Original strand, 28700827 - 28701110
Alignment:
| Q |
14 |
catcagaattaggagcaaaa-acctagcaacaggagtcatactataaagtctatgaaaggatccaagtttttgttcatcttgaatgaccaaacactttaa |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28700827 |
catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctacgaaatgatccaagcttttgttcatcttgaatgaccaaacactttaa |
28700926 |
T |
|
| Q |
113 |
cacatcatgtgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcagcagagagt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28700927 |
cacatcatgtgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagt |
28701026 |
T |
|
| Q |
213 |
tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatcggtagcaccatagag |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28701027 |
tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccattggtagcaccatagag |
28701110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 14 - 296
Target Start/End: Original strand, 28731418 - 28731701
Alignment:
| Q |
14 |
catcagaattaggagcaaaa-acctagcaacaggagtcatactataaagtctatgaaaggatccaagtttttgttcatcttgaatgaccaaacactttaa |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
28731418 |
catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaagcttttgttcatcttgaatgaacaaacactttaa |
28731517 |
T |
|
| Q |
113 |
cacatcatgtgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcagcagagagt |
212 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28731518 |
cacatcatgtgatgcaagaagaacaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagt |
28731617 |
T |
|
| Q |
213 |
tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatcggtagcaccatagag |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28731618 |
tgagcacctttaccagctttttgcaacacatcaaaaacaccaagctgacttgcagaatggagtaccattggtagcaccatagag |
28731701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 280
Target Start/End: Original strand, 28740357 - 28740624
Alignment:
| Q |
14 |
catcagaattaggagcaaaa-acctagcaacaggagtcatactataaagtctatgaaaggatccaagtttttgttcatcttgaatgaccaaacactttaa |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
28740357 |
catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgatccaagcttttgttcatcttgaatgagcaaacactttaa |
28740456 |
T |
|
| Q |
113 |
cacatcatgtgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcagcagagagt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28740457 |
cacatcatgtgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatgggcagagagt |
28740556 |
T |
|
| Q |
213 |
tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccat |
280 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28740557 |
tgagcatctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtcccat |
28740624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 267
Target Start/End: Original strand, 28644307 - 28644561
Alignment:
| Q |
14 |
catcagaattaggagcaaaa-acctagcaacaggagtcatactataaagtctatgaaaggatccaagtttttgttcatcttgaatgaccaaacactttaa |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28644307 |
catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgttccaagcttttgttcatcttgaatgaccaaacactttaa |
28644406 |
T |
|
| Q |
113 |
cacatcatgtgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcagcagagagt |
212 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
28644407 |
cacatcatgtgaggcaagaacagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacacaatctcatcggcagagagt |
28644506 |
T |
|
| Q |
213 |
tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcag |
267 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28644507 |
tgagcacctttaccagttttttgcaacacatcaaatacaccaagctgacttgcag |
28644561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 28726718 - 28727000
Alignment:
| Q |
14 |
catcagaattaggagcaaaa-acctagcaacaggagtcatactataaagtctatgaaaggatccaagtttttgttcatcttgaatgaccaaacactttaa |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
28726718 |
catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgttccaagcttttgttcatcttgaatgatcaaacactttaa |
28726817 |
T |
|
| Q |
113 |
cacatcatgtgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcagcagagagt |
212 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||| |||| ||| |||||||||||||| ||||||||| |
|
|
| T |
28726818 |
cacatcatgtgatgcaagaagaacaagaatgcgatccaacattttgggagcatcaagattgttgcaggaaagacgggacgcaatctcatcggcagagagt |
28726917 |
T |
|
| Q |
213 |
tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatcggtagcaccataga |
295 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| |||| |||||||||||||| |
|
|
| T |
28726918 |
tgagcacctttgccagctttttgcaacacatcaaatacaccaagctcagttgcagaatggagtgccattggtagcaccataga |
28727000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 28711729 - 28712011
Alignment:
| Q |
14 |
catcagaattaggagcaaaa-acctagcaacaggagtcatactataaagtctatgaaaggatccaagtttttgttcatcttgaatgaccaaacactttaa |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| |||| |||||||||||||| |||||||||||| |
|
|
| T |
28711729 |
catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgttccaagcttttcttcatcttgaatgatcaaacactttaa |
28711828 |
T |
|
| Q |
113 |
cacatcatgtgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcagcagagagt |
212 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||| ||| |||||||||||||| ||||||||| |
|
|
| T |
28711829 |
cacatcatgtgaggcaagaacagcaagaatgcgatccaacattttgggagcatcaagattgttgcaggaaagacgggacgcaatctcatcggcagagagt |
28711928 |
T |
|
| Q |
213 |
tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatcggtagcaccataga |
295 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| |||| |||||||||||||| |
|
|
| T |
28711929 |
tgagcacctttgccagctttttgcaacacatcaaatacaccaagctcagttgcagaatggagtgccattggtagcaccataga |
28712011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 28719076 - 28719358
Alignment:
| Q |
14 |
catcagaattaggagcaaaa-acctagcaacaggagtcatactataaagtctatgaaaggatccaagtttttgttcatcttgaatgaccaaacactttaa |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| |||| |||||||||||||| |||||||||||| |
|
|
| T |
28719076 |
catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgttccaagcttttcttcatcttgaatgatcaaacactttaa |
28719175 |
T |
|
| Q |
113 |
cacatcatgtgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcagcagagagt |
212 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||| |||| |||| ||| |||||||||||||| ||||||||| |
|
|
| T |
28719176 |
cacatcatgtgaggcaagaacagcaagaatgcgatccaacattttgggagcatcaagattgttgcaggaaagacgggacgcaatctcatcggcagagagt |
28719275 |
T |
|
| Q |
213 |
tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcagaatggagtaccatcggtagcaccataga |
295 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| |||| |||||||||||||| |
|
|
| T |
28719276 |
tgagcacctttgccagctttttgcaacacatcaaatacaccaagctcagttgcagaatggagtgccattggtagcaccataga |
28719358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 268
Target Start/End: Original strand, 28636573 - 28636828
Alignment:
| Q |
14 |
catcagaattaggagcaaaa-acctagcaacaggagtcatactataaagtctatgaaaggatccaagtttttgttcatcttgaatgaccaaacactttaa |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28636573 |
catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgttccaagcttttgttcatcttgaatgaccaaacactttaa |
28636672 |
T |
|
| Q |
113 |
cacatcatgtgatgcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgcaagaaatacgcgacgcaatctcatcagcagagagt |
212 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28636673 |
cacatcatgggatgcaagaagagcaaggatgcgatccaacattttcggggcatcaggattgctgcaagaaatacgcgacgcaatctcatcggcagagagt |
28636772 |
T |
|
| Q |
213 |
tgagcacctttaccagctttttgcaacacatcaaatacaccaagctgacttgcaga |
268 |
Q |
| |
|
|||||| |||| |||||||||||||| |||||||| |||||||||| | ||||||| |
|
|
| T |
28636773 |
tgagcatcttttccagctttttgcaaaacatcaaaaacaccaagctcagttgcaga |
28636828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 28653259 - 28653367
Alignment:
| Q |
14 |
catcagaattaggagcaaaa-acctagcaacaggagtcatactataaagtctatgaaaggatccaagtttttgttcatcttgaatgaccaaacactttaa |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28653259 |
catcagaattaggagcaaaaaacctagcaacaggagtcatactataaagtctatgaaatgttccaagcttttgttcatcttgaatgaccaaacactttaa |
28653358 |
T |
|
| Q |
113 |
cacatcatg |
121 |
Q |
| |
|
||||||||| |
|
|
| T |
28653359 |
cacatcatg |
28653367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 256
Target Start/End: Complemental strand, 29645941 - 29645808
Alignment:
| Q |
126 |
gcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgct---gcaagaaatacgcgacgcaatctcatcagcagagagttgagcacctt |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| | |||||| | | |||| ||| ||| | || || || || |||||||||||||||| |
|
|
| T |
29645941 |
gcaagaagagcaagaatgcgatccaacattttgaaagcttttggattgttaatgttggaaagacgggacacgatgtcgtcggccgagagttgagcacctt |
29645842 |
T |
|
| Q |
223 |
taccagctttttgcaacacatcaaatacaccaag |
256 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||| |
|
|
| T |
29645841 |
taccggctttttgcaacacttcaaaaacaccaag |
29645808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 49110066 - 49110118
Alignment:
| Q |
126 |
gcaagaagagcaagaatgcgatccaacattttgggagcatcaggattgctgca |
178 |
Q |
| |
|
||||||||||||||||||||||| |||||||| || ||||| |||||| |||| |
|
|
| T |
49110066 |
gcaagaagagcaagaatgcgatctaacattttaggtgcatctggattggtgca |
49110118 |
T |
|
Back To:
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