View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1637_low_16 (Length: 300)
Name: NF1637_low_16
Description: NF1637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1637_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 286
Target Start/End: Original strand, 31251903 - 31252177
Alignment:
| Q |
11 |
caaaggaatcattaaatgtgcaatttgattggttttagaagctaaaacccgacttatgtaaaagcaaagaaggttttgtcctaaatccttgcatgttatt |
110 |
Q |
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| T |
31251903 |
caaaggaatcattaaatgtgcaatttgattggtttaagaagctaaaacccgacttatgtaaaagtaaagaaggttttgtcctaaatccttacatgttatt |
31252002 |
T |
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| Q |
111 |
tttgtgtgatataaatggtttatcatctatatgactaacaaaacttttg-ttttttatgagttcacagaatgtgacagcttcttcaaaaactcattgttt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31252003 |
tttgtgtgatataaatggtttatcatctatatgactaacaaaacttttgtttttttatgagttcacagaatgtgacagcttcttcaaaaactcattgttt |
31252102 |
T |
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| Q |
210 |
atagtgggagagattggtggaaatgatataatttttatcatctttctaaaactattacagaactacgagagaaagtt |
286 |
Q |
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| T |
31252103 |
atagtgggagagattggtggaaatgatat--tttttatcatctttctaaaactattacagaactacgagagaaagtt |
31252177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 286
Target Start/End: Complemental strand, 13003683 - 13003409
Alignment:
| Q |
11 |
caaaggaatcattaaatgtgcaatttgattggttttagaagctaaaacccgacttatgtaaaagcaaagaaggttttgtcctaaatccttgcatgttatt |
110 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13003683 |
caaaggaatcattagatgtgcaatttgattggtttaagaagctaaaacccgacttatgtaaaagcaaagaaggttttgtcctaaatccttgcatgttatt |
13003584 |
T |
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| Q |
111 |
tttgtgtgatataaatggtttatcatctatatgactaacaaaacttttgtt-ttttatgagttcacagaatgtgacagcttcttcaaaaactcattgttt |
209 |
Q |
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| T |
13003583 |
tttgtgtgatataaatggtttatcatctatatgactaacaaaacttttgtttttttatgagttcacagaatgtgacagcttcttcaaaaaatcattgttt |
13003484 |
T |
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| Q |
210 |
atagtgggagagattggtggaaatgatataatttttatcatctttctaaaactattacagaactacgagagaaagtt |
286 |
Q |
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| T |
13003483 |
atagtgggagagattggtggaaatgatat--tttttatcatctttctaaaactattaaagaactacgagagaaagtt |
13003409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 31094472 - 31094203
Alignment:
| Q |
19 |
tcattaaatgtgcaatttgattggttttagaagctaaaacccgacttatgtaaaagcaaagaaggttttgtcctaaatccttgcatgttatttttgtgtg |
118 |
Q |
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| T |
31094472 |
tcattaattgtgcaatttgattggtttaagaagctaaaacccttattgtgtaaaaacaaagaaggttttgtcctaactccttgcttgttatttttgtgtg |
31094373 |
T |
|
| Q |
119 |
atataaatggtttatcatctatatgactaacaaaacttttgtttt----ttatgagttcacagaatgtgacagcttcttcaaaaactcattgtttatagt |
214 |
Q |
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||||||||| ||||||||| |||||||||||||||||||| |||| || |||||||||||||||||| |||||||||||||| || ||||||||||| |
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| T |
31094372 |
atataaatgatttatcatcaatatgactaacaaaactttttttttcttcttgtgagttcacagaatgtgatagcttcttcaaaaaatcgttgtttatagt |
31094273 |
T |
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| Q |
215 |
gggagagattggtggaaatgatataatttttatcatctttctaaaactattacagaactacgagagaaagtt |
286 |
Q |
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| T |
31094272 |
gggagagattggtggaaatgatat--tttttaccatcttttcaaaactattacagaactgcaagagatagtt |
31094203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 29 - 281
Target Start/End: Original strand, 27205984 - 27206235
Alignment:
| Q |
29 |
tgcaatttgattggttttagaagctaaaacccgacttatgtaaaagcaaagaaggttttgtcctaaatccttgcatgttatttttgtgtgatataaatgg |
128 |
Q |
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||||||||||||||||| ||||||| |||||| | ||||||| ||||||||||||||||||| ||| ||||| ||||||||| ||| |||||| | |
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| T |
27205984 |
tgcaatttgattggtttaagaagcttaaaccctcatcgtgtaaaactaaagaaggttttgtcctaactccctgcatactatttttgtttgaaataaattg |
27206083 |
T |
|
| Q |
129 |
tttatcatctatatgactaacaaaacttttgtttt-ttatgagttcacagaatgtgacagcttcttcaaaaactcattgtttatagtgggagagattggt |
227 |
Q |
| |
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||| || | || |||||||||||||| |||||||| || |||||||||||||||||| |||||||||||||| | |||||| ||||||||||||||||| |
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| T |
27206084 |
tttttcgtgtacatgactaacaaaacatttgttttgttgtgagttcacagaatgtgatagcttcttcaaaaaattgttgtttgtagtgggagagattggt |
27206183 |
T |
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| Q |
228 |
ggaaatgatataatttttatcatctttctaaaactattacagaactacgagaga |
281 |
Q |
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||||||| | ||| | ||||||||||||||||||||||||| ||||||| |
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| T |
27206184 |
agaaatgacgt--tttattcgatctttctaaaactattacagaactgcgagaga |
27206235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 136 - 279
Target Start/End: Original strand, 16162748 - 16162891
Alignment:
| Q |
136 |
tctatatgactaacaaaacttttgttttttat--gagttcacagaatgtgacagcttcttcaaaaactcattgtttatagtgggagagattggtggaaat |
233 |
Q |
| |
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||||||||||||||||||||||| |||||| | || | ||||| ||||| |||||||||||| ||||| |||||||||||||| |||||||||||| |
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| T |
16162748 |
tctatatgactaacaaaactttttttttttttttgaaataacagagtgtgatagcttcttcaaacgatcattatttatagtgggagaaattggtggaaat |
16162847 |
T |
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| Q |
234 |
gatataatttttatcatctttctaaaactattacagaactacgaga |
279 |
Q |
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||| | ||||| ||| |||||||||||||||||||||| ||||| |
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| T |
16162848 |
gatgt--ttttttacatatttctaaaactattacagaactgcgaga |
16162891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 25658207 - 25658257
Alignment:
| Q |
186 |
agcttcttcaaaaactcattgtttatagtgggagagattggtggaaatgat |
236 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
25658207 |
agctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgat |
25658257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 25664612 - 25664662
Alignment:
| Q |
186 |
agcttcttcaaaaactcattgtttatagtgggagagattggtggaaatgat |
236 |
Q |
| |
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|||| ||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
25664612 |
agctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgat |
25664662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 25671017 - 25671067
Alignment:
| Q |
186 |
agcttcttcaaaaactcattgtttatagtgggagagattggtggaaatgat |
236 |
Q |
| |
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|||| ||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
25671017 |
agctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgat |
25671067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 25677422 - 25677472
Alignment:
| Q |
186 |
agcttcttcaaaaactcattgtttatagtgggagagattggtggaaatgat |
236 |
Q |
| |
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|||| ||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
25677422 |
agctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgat |
25677472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 25684096 - 25684146
Alignment:
| Q |
186 |
agcttcttcaaaaactcattgtttatagtgggagagattggtggaaatgat |
236 |
Q |
| |
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|||| ||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
25684096 |
agctacttcaaaaaatcattgtttatagtgggagagattggtgggaatgat |
25684146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 115
Target Start/End: Original strand, 27228714 - 27228810
Alignment:
| Q |
19 |
tcattaaatgtgcaatttgattggttttagaagctaaaacccgacttatgtaaaagcaaagaaggttttgtcctaaatccttgcatgttatttttgt |
115 |
Q |
| |
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|||||||||||||||||||| |||||| |||| ||||||| || |||||||| |||||||||||||| ||| | ||||| | |||||||||| |
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| T |
27228714 |
tcattaaatgtgcaatttgaatggtttaagaatataaaaccatcattgtgtaaaagtgaagaaggttttgtcataactacttgcgtattatttttgt |
27228810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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