View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1637_low_17 (Length: 285)
Name: NF1637_low_17
Description: NF1637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1637_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 281
Target Start/End: Complemental strand, 1572374 - 1572107
Alignment:
| Q |
14 |
tatcctctctgttcttgatcttatttgactttcatgtgtctgggtcatatgacgtaaaagaaatgctctggttttacacccaataggaggacacaataca |
113 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1572374 |
tatcctctctgttcttgatcttaattgactttcatgtgtctgagtcatatgacgtaaaagaaacgctctggttttacacccaataggaggacacaataca |
1572275 |
T |
|
| Q |
114 |
acatcttcttgaaaaacttaagcctcgatcttataggtagatgaaagtgaagcgcatcaattttgcttttaactatcatatatggtggtttaatcctctc |
213 |
Q |
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|||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1572274 |
acatcttcttgaaaaaattaagcatcgatcttataggtaggtgaaagtgaagcgcatcaattttgcttttaactatcatatatggtggtttaatcatctc |
1572175 |
T |
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| Q |
214 |
tcttgtttgcgaatcatattgtaacaattttgctttgcctatttcttctattactccttgaacctttg |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1572174 |
tcttgtttgcgaatcatattgtaacaattttgctttgcctctttcttctattactccttgaacctttg |
1572107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 46760518 - 46760573
Alignment:
| Q |
155 |
tgaaagtgaagcgcatcaattttgcttttaactatcatatatggtggtttaatcct |
210 |
Q |
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|||||| ||||||||| |||||| ||||| |||||||||||||||||||||||||| |
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| T |
46760518 |
tgaaagcgaagcgcattaattttacttttgactatcatatatggtggtttaatcct |
46760573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 15846234 - 15846304
Alignment:
| Q |
168 |
catcaattttgcttttaactatcatatatggtggtttaatcctctctcttgtttgcgaatcatattgtaac |
238 |
Q |
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| T |
15846234 |
catcaatttgacttttaactatcatttttgctagtttaatcttctctcttgtttgggaatcacattataac |
15846304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 23636630 - 23636666
Alignment:
| Q |
172 |
aattttgcttttaactatcatatatggtggtttaatc |
208 |
Q |
| |
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||||||||||||||||||||||| |||||| |||||| |
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| T |
23636630 |
aattttgcttttaactatcatatgtggtggcttaatc |
23636666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 27529600 - 27529653
Alignment:
| Q |
169 |
atcaattttgcttttaactatcatatatggtggtttaatcctctctcttgtttg |
222 |
Q |
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||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
27529600 |
atcaattttgcttttgactatcatttatagtggtttaatcctctctcttgtttg |
27529653 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 238
Target Start/End: Complemental strand, 44617241 - 44617036
Alignment:
| Q |
31 |
atcttatttgactttcatgtgtctgggtcatatgacgtaaaagaaatgctctggttttacacccaataggaggacacaatacaacatcttcttgaaaaac |
130 |
Q |
| |
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|||| ||||| |||||||||||||||||||| || ||| |||||||| ||| | ||| || | || ||||||| | | |||||||||||| ||||| |
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| T |
44617241 |
atctgatttggctttcatgtgtctgggtcatttggcgtgaaagaaattctcgagattttcaacaaag-ggaggactcgtttcaacatcttcttcaaaaa- |
44617144 |
T |
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| Q |
131 |
ttaagcctcgatcttataggtagatgaaagtgaagcgcatcaattttgcttttaactatcatatatggtggtttaatcctctctcttgtttgcgaatcat |
230 |
Q |
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|||||| || ||||||| | | | |||| ||| | |||||||||||||||||||||| || | | ||| |||||| ||||||||||||| || |||| |
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| T |
44617143 |
ttaagcttcaatcttattccttggtaaaagagaatcacatcaattttgcttttaactattatttgttgtgtattaatcatctctcttgtttgggagtcat |
44617044 |
T |
|
| Q |
231 |
attgtaac |
238 |
Q |
| |
|
|||||||| |
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|
| T |
44617043 |
attgtaac |
44617036 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 34514398 - 34514359
Alignment:
| Q |
170 |
tcaattttgcttttaactatcatatatggtggtttaatcc |
209 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||| |
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| T |
34514398 |
tcaattttgcttttaactatcatatgtggtggcttaatcc |
34514359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 212
Target Start/End: Original strand, 23847940 - 23847984
Alignment:
| Q |
168 |
catcaattttgcttttaactatcatatatggtggtttaatcctct |
212 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| | |||||||| |
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| T |
23847940 |
catcaattttgcttttaactaccatatgtggtggctaaatcctct |
23847984 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 10337854 - 10337929
Alignment:
| Q |
155 |
tgaaagtgaagcgcatcaattttgcttttaactatcatatatggtggtttaatcctctctcttgtttgcgaatcat |
230 |
Q |
| |
|
|||||| ||| ||||||||||||||||||| |||||||| ||||||||||||| ||| ||||||| ||||||| |
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|
| T |
10337854 |
tgaaagcgaatcgcatcaattttgcttttacatatcatatgtggtggtttaatcatctacattgtttgggaatcat |
10337929 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 136
Target Start/End: Complemental strand, 41038815 - 41038716
Alignment:
| Q |
36 |
atttgactttcatgtgtctgggtcatatgacgtaaaagaaatgctctggttttacacccaataggaggacacaatacaacatcttcttgaaaaacttaag |
135 |
Q |
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|
||||||||||||||||| |||||||| || ||| |||||||||||| |||| || ||| ||||||| | |||||||||||||||||||| ||||| |
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| T |
41038815 |
atttgactttcatgtgtttgggtcatttggcgtgaaagaaatgctcgaatttttca-acaaaaggaggaatcgttacaacatcttcttgaaaaaattaag |
41038717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 17077107 - 17077048
Alignment:
| Q |
149 |
ggtagatgaaagtgaagcgcatcaattttgcttttaactatcatatatggtggtttaatc |
208 |
Q |
| |
|
|||| ||||||||||| | | | ||||||||||| |||||||||| |||||||||||||| |
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|
| T |
17077107 |
ggtatatgaaagtgaatcacgttaattttgctttcaactatcatagatggtggtttaatc |
17077048 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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