View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1637_low_2 (Length: 507)
Name: NF1637_low_2
Description: NF1637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1637_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 23 - 453
Target Start/End: Complemental strand, 472715 - 472288
Alignment:
| Q |
23 |
ttctatacggttatttatttttcatgtctttttacatttttccttagccatgggtttcatgtgaaacttcaacttcaagaaatcatagattttaaacctt |
122 |
Q |
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| T |
472715 |
ttctatacggttatttatttttcatgtctttttacatttttccttagccatgggtttcatgtgaaacttcaacttcaagaaatcatagattttaaacctt |
472616 |
T |
|
| Q |
123 |
ttgtggacactagacacaacaaaatcctctccaactcacatttcagatatctaata--gaaaaaggaattgttggtatgtagtaatactattcaacaaaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
472615 |
ttgtggacactagacacaacaaaatcctctccaactaacatttctgatatctaatatagaaaaaggaattgttggtatgtagtaatactattcaacaaaa |
472516 |
T |
|
| Q |
221 |
tgcaatgattggaatgttcctaatttttctaattactgagcagaaggagaagttgcttgcagctgaataagatatcttatgatgagagaatatgcagatc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
472515 |
tgcaatgattggaatgttcctaatttttctaattactgagcagaaggagaagttgcttgcagctgaataagatatcttgtgatgagagaatatgcagatc |
472416 |
T |
|
| Q |
321 |
aggtggtttttgaagcggggagaggctgcagtaaagtattatattgcaatgtagcaaactgaggaaattgcagtggtttttacaacaactatgcaactgc |
420 |
Q |
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| T |
472415 |
cggtggtttttgaagcggggagaggctactgtaaag-----tattgcaatgtagcaaactgagtaaattgcggtggtttttacaacaactatgcaactgc |
472321 |
T |
|
| Q |
421 |
tccatagatatattaagttgttttttatgtgaa |
453 |
Q |
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| T |
472320 |
tccatagatatattaagttgttttttatgtgaa |
472288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 154 - 453
Target Start/End: Original strand, 41526668 - 41526969
Alignment:
| Q |
154 |
caactcacatttcagatatctaatagaaaaaggaattgttggtatgtagtaatactattcaacaaaatgcaatgattggaatgttcctaatttttctaat |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41526668 |
caactcacatttcagatatctaatagaaaaaggaattgttggtatgtagtaatactattcaacaaaatgcaatgattggaatgttcctaatttttctaat |
41526767 |
T |
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| Q |
254 |
tactgagcagaaggagaagttgct----tgcagctgaataagatatcttatgatgagagaatatgcagatcaggtggtttttgaagcggggagaggctgc |
349 |
Q |
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| T |
41526768 |
tactgagcagaaggagaagttgcttgcatgcagctgaataagatatcttatgatgagagaatatgcagatcaggtggtttttgaagcggggagaggctac |
41526867 |
T |
|
| Q |
350 |
agtaaagtattatattgcaatgtagcaaactgaggaaattgcagtggtttttacaacaactatgcaactgctccatagatatattaagttgttttttatg |
449 |
Q |
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||||||||||| | || | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41526868 |
agtaaagtattgcaatgta--gtagcaaactgagtaaattgcagtggtttttacaacaactatgcaactgctccatagatatattaagttgttttttatg |
41526965 |
T |
|
| Q |
450 |
tgaa |
453 |
Q |
| |
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|||| |
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|
| T |
41526966 |
tgaa |
41526969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 6 - 158
Target Start/End: Original strand, 41521883 - 41522035
Alignment:
| Q |
6 |
atttcaatggtacttggttctatacggttatttatttttcatgtctttttacatttttccttagccatgggtttcatgtgaaacttcaacttcaagaaat |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41521883 |
atttcaatggtacttggttctatacggttatttatttttcatgtcttttgacatttttccttagccatgggtttcatgtgaaacttcaacttcaagaaat |
41521982 |
T |
|
| Q |
106 |
catagattttaaaccttttgtggacactagacacaacaaaatcctctccaact |
158 |
Q |
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| T |
41521983 |
catagattttaaaccttttgtggacactagacacaacaaaatcctctccaact |
41522035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 444 - 497
Target Start/End: Original strand, 41526993 - 41527046
Alignment:
| Q |
444 |
tttatgtgaaattagtgctagagtttggaattatatgcttaatcggatcctttg |
497 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41526993 |
tttatgtgaaattagtgctagagtttggaattatatgcttaatcagatcctttg |
41527046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 35 - 410
Target Start/End: Complemental strand, 1242143 - 1241785
Alignment:
| Q |
35 |
atttatttttcatgtctttttacatttttccttagccatgggtttcatgtgaaacttcaacttcaagaaatcatagattttaaaccttttgtggacacta |
134 |
Q |
| |
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|||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
1242143 |
atttatgtttcatgtctttttacatttttccttggccattggtttcatctgaaacttcaacttcaagaaatcacatattttaaaccttttgtggacacta |
1242044 |
T |
|
| Q |
135 |
gacacaacaaaatcctctccaactcacat-ttcagatatctaatagaaaaaggaattgttggtatgtagtaatactattcaacaaaatgcaatgattgga |
233 |
Q |
| |
|
||||||||||||||||||||||| ||||| || | |||||||||||||||||||||||||||| | ||| || |||||||||||| |
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|
| T |
1242043 |
gacacaacaaaatcctctccaacgcacatgatctggtatctaatagaaaaaggaattgttggta---------atgatt----ggaaggcaatgattgga |
1241957 |
T |
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| Q |
234 |
atgttcctaatttttctaattactgagcagaaggagaagttgcttgcagctgaataagatatcttatgatgagagaatatgcagatcaggtggtttttga |
333 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
1241956 |
atgttcctaatttttctaattactgagcagaatacgaagttgcttgcagctgaataagatatcttgtgatgagagaatatgcagatccggtggtttttga |
1241857 |
T |
|
| Q |
334 |
agcggggagaggctgcagtaaagtattatattgcaatgtagcaaactgaggaaattgcagtggtttttacaacaact |
410 |
Q |
| |
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|||||||||||||| |||||||| | |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1241856 |
agcggggagaggctacagtaaag-----tcttgcaatgtagcaaactgagtaaattgcagtggtttttacaacaact |
1241785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 445 - 497
Target Start/End: Complemental strand, 1241727 - 1241675
Alignment:
| Q |
445 |
ttatgtgaaattagtgctagagtttggaattatatgcttaatcggatcctttg |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1241727 |
ttatgtgaaattagtgctagagtttggaattatatgcttaatcggatcctttg |
1241675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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