View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1637_low_21 (Length: 236)
Name: NF1637_low_21
Description: NF1637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1637_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 13151580 - 13151626
Alignment:
| Q |
173 |
acccttacaacgaaagctcttttatccacatacacttgcacttgtac |
219 |
Q |
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| T |
13151580 |
acccttacaacgaaagctcttttatccacatacacttgcacttgtac |
13151626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 13154482 - 13154554
Alignment:
| Q |
76 |
ataaagcgttcaaccttcatttttctaaacaatgtgagacttttaactcacacttgctacataacaatcttcc |
148 |
Q |
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|||||| ||||||||| || |||||||| ||||||||||||| ||||||| |||||||||| ||||||||||| |
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| T |
13154482 |
ataaagtgttcaacctccacttttctaagcaatgtgagacttctaactcatacttgctacacaacaatcttcc |
13154554 |
T |
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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 25390007 - 25390065
Alignment:
| Q |
87 |
aaccttcatttttctaaacaatgtgagacttttaactcacacttgctacataacaatct |
145 |
Q |
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| T |
25390007 |
aacctccatttttctaagcaatgtgagatttctaactcaaacttgctacacaacaatct |
25390065 |
T |
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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 31385785 - 31385728
Alignment:
| Q |
85 |
tcaaccttcatttttctaaacaatgtgagacttttaactcacacttgctacataacaa |
142 |
Q |
| |
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||||||| ||||||||||| | |||| |||||| |||||||||||||||||| ||||| |
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| T |
31385785 |
tcaacctccatttttctaaccgatgtcagacttctaactcacacttgctacacaacaa |
31385728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 130
Target Start/End: Complemental strand, 13766832 - 13766787
Alignment:
| Q |
85 |
tcaaccttcatttttctaaacaatgtgagacttttaactcacactt |
130 |
Q |
| |
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||||||| || ||||||||||||||| |||||| |||||||||||| |
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|
| T |
13766832 |
tcaacctccacttttctaaacaatgttagacttctaactcacactt |
13766787 |
T |
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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 13091816 - 13091864
Alignment:
| Q |
23 |
gacaccaaattttagccaaaaatcttaagacagtgagtttatgggttct |
71 |
Q |
| |
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||||||| |||||||| |||| ||||||||| |||||||||||||||| |
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| T |
13091816 |
gacaccacattttagcacaaaaccttaagacattgagtttatgggttct |
13091864 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 45834505 - 45834445
Alignment:
| Q |
85 |
tcaaccttcatttttctaaacaatgtgagacttttaactcacacttgctacataacaatct |
145 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||| |||||||||||| || ||||| |
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|
| T |
45834505 |
tcaacctccatttttctaaacaatatgagacttttaaccaacacttgctacacaataatct |
45834445 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 7147742 - 7147797
Alignment:
| Q |
78 |
aaagcgttcaaccttcatttttctaaacaatgtgagacttttaactcacacttgct |
133 |
Q |
| |
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|||| ||||||||| || |||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
7147742 |
aaagtgttcaacctccacttttctaagcaatgtgagacttctaactcacacttgct |
7147797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 5172928 - 5172864
Alignment:
| Q |
83 |
gttcaaccttcatttttctaaacaatgtgagacttttaactcacacttgctacataacaatcttc |
147 |
Q |
| |
|
|||||||||||| |||||||| |||| | ||||| |||||||||||||||||| ||||| |||| |
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|
| T |
5172928 |
gttcaaccttcacttttctaagcaatatatgacttctaactcacacttgctacacaacaagcttc |
5172864 |
T |
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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 40991803 - 40991744
Alignment:
| Q |
83 |
gttcaaccttcatttttctaaacaatgtgagacttttaactcacacttgctacataacaa |
142 |
Q |
| |
|
||||||||| || |||||||| ||||||| ||||| |||||||||||| ||||| ||||| |
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|
| T |
40991803 |
gttcaacctccacttttctaagcaatgtgggacttctaactcacacttcctacacaacaa |
40991744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 136
Target Start/End: Complemental strand, 4715333 - 4715273
Alignment:
| Q |
76 |
ataaagcgttcaaccttcatttttctaaacaatgtgagacttttaactcacacttgctaca |
136 |
Q |
| |
|
|||||| ||||||||| || |||||| ||||||| |||||| ||||||||||||| |||| |
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| T |
4715333 |
ataaagtgttcaacctccacttttcttaacaatgcaagacttctaactcacacttgttaca |
4715273 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 6071189 - 6071115
Alignment:
| Q |
76 |
ataaagcgttcaaccttcatttttctaaacaatgtgagacttttaactcacacttgctacataacaatcttcccct |
151 |
Q |
| |
|
|||||| ||||||||| || ||||||| ||||||| ||| | |||||||||||||| ||| |||||||||||||| |
|
|
| T |
6071189 |
ataaagtgttcaacctccacttttctattcaatgtgggacatataactcacacttgc-acacaacaatcttcccct |
6071115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 143
Target Start/End: Original strand, 34661710 - 34661777
Alignment:
| Q |
76 |
ataaagcgttcaaccttcatttttctaaacaatgtgagacttttaactcacacttgctacataacaat |
143 |
Q |
| |
|
|||||| | ||||||| || |||||||| ||||||||| || |||||||||||||||||| |||||| |
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|
| T |
34661710 |
ataaagtgatcaacctccacttttctaagtaatgtgagatttctaactcacacttgctacacaacaat |
34661777 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 165
Target Start/End: Complemental strand, 42730364 - 42730284
Alignment:
| Q |
85 |
tcaaccttcatttttctaaacaatgtgagacttttaactcacacttgctacataacaatcttcccctatattgtgagtcat |
165 |
Q |
| |
|
||||||| || ||||| || | ||||| |||| ||||||| |||||||||| |||||||||||||| | |||||||||| |
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|
| T |
42730364 |
tcaacctccacttttcaaaccgatgtggaacttctaactcagacttgctacacaacaatcttcccctcaagtgtgagtcat |
42730284 |
T |
|
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