View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1637_low_24 (Length: 214)
Name: NF1637_low_24
Description: NF1637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1637_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 12 - 195
Target Start/End: Original strand, 42482742 - 42482925
Alignment:
| Q |
12 |
ttatacttatacttatactgtcagtttatgcaagtccacaaaatttagtccaaattcacatgctaagagggttagtagatgaggttaggagttttccttc |
111 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42482742 |
ttatacttatacttatactgtcagtttatgcaagcccacaaaatttagtccaaattcacatgctaagagggttagtagatgaggttaggagttttccttc |
42482841 |
T |
|
| Q |
112 |
aaaaaagagcttaggagtttgaggcttgtatatgaaagttataaatataaagatttcaccaaaaaactctctacacttatttaa |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42482842 |
aaaaaagagcttaggagtttgaggcttgtatatgaaagttattaatataaagatttcaccaaaaaactctctacacttatttaa |
42482925 |
T |
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