View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1637_low_3 (Length: 498)
Name: NF1637_low_3
Description: NF1637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1637_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 9 - 475
Target Start/End: Original strand, 54075077 - 54075543
Alignment:
| Q |
9 |
tgaggaggaattttgttgtttacgagtctttttcaatggaagacgacgtcgttttgtctgccaaaggtgtgaatcatcgtcaaggctacgacaggccggc |
108 |
Q |
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| T |
54075077 |
tgaggtggaattttgttgtttacgagtctttttcaatggaagacgacgtagttttgtttgccaaaggtgttaatcatcgtcaaggctacgacaggccggc |
54075176 |
T |
|
| Q |
109 |
gaaggcgcttaactgtgttttccaaataggagacggaattcgcaccgccgttacaagctctgttcaagaggttttccgatgcttgcatccagatccgtct |
208 |
Q |
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| T |
54075177 |
gaaggagcttaactgtgttttccaaataggagacggaattcgcaccgccgttacaagctctgttcaagaggttttccgatgcttgcatccagatccgtct |
54075276 |
T |
|
| Q |
209 |
gatttgggttcgaattccaaaattggtgtttccctcgagattattggagaaaacatcgtggttccgtccgtagcgtattacactcccaggcccaataaac |
308 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54075277 |
gatttgggttcgaattccgaaattggagtttccctcgagattattggagaaaacatcgtggttccgtccgtagcgtattacactcccaggcccaataaac |
54075376 |
T |
|
| Q |
309 |
ccaattctaagcccgtggctgttcaaaagtttgggcctccggcccagcccaaatatttcctttgtgcatgcacgatggtttataatgtggcgaagttttt |
408 |
Q |
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||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54075377 |
ccaattctaagcccgtggcagttcaaaactttgggcctccggcccagcccaaatatttcctttgtgcatgcacgatggtttataatgtggcgaagttttt |
54075476 |
T |
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| Q |
409 |
gagggaatgggttgtgtatcattcaaaagtgggagtggaaaatttcatattgtatgataatggaagc |
475 |
Q |
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| T |
54075477 |
gagggaatgggttgtgtatcattcaaaagtgggagtggaaaatttcatattgtatgataatggaagc |
54075543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 3229475 - 3229393
Alignment:
| Q |
9 |
tgaggaggaattttgttgtttacgagtctttttcaatggaagacgacgtcgttttgtctgccaaaggtgtgaatcatcgtcaa |
91 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3229475 |
tgaggtggaattttgttgtttacgagtctttttcaatggaggacgacgtcgttttgtttgccaaaggtgtgaatcatcgtcaa |
3229393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 48529259 - 48529190
Alignment:
| Q |
138 |
gagacggaattcgcaccgccgttacaagctctgttcaagaggttttccgatgcttgcatccagatccgtc |
207 |
Q |
| |
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| T |
48529259 |
gagacggaatttgcaccgccgttacaagctccattcaagaggttttcccatgcctccatccagatccgtc |
48529190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 34849736 - 34849783
Alignment:
| Q |
138 |
gagacggaattcgcaccgccgttacaagctctgttcaagaggttttcc |
185 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
34849736 |
gagacgtaattcgcaccgccgttacaagctccgttcaagaggttttcc |
34849783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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