View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1637_low_5 (Length: 428)
Name: NF1637_low_5
Description: NF1637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1637_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 398
Target Start/End: Original strand, 47496056 - 47496424
Alignment:
| Q |
18 |
gtaaggacgtgcttcattacgtacgttgtaggtttgaaattcatgtaattttaattatgtacctttgaaattattaagaaaaattaaatataactagaat |
117 |
Q |
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| T |
47496056 |
gtaaggacgtgcttcattacgtacgttgtaggtttgaaattcatgtaatttttattatgtacctttgaatttattaagaaaaattaaatataactagaat |
47496155 |
T |
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| Q |
118 |
attattatatatgtgtgtcaacaacacattacatatctctttgaaaaatgaatctctaatattaaaatgagaattagtttcaatatcatattaaaacata |
217 |
Q |
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| T |
47496156 |
attattatatatgtgtgtcaacaacacattacatatctc-ttgaaaaatgaatctctaatattaaaatgagaattagtttcaatatcatattaaaacata |
47496254 |
T |
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| Q |
218 |
tggttgaaattaaaacactcaagaaagactcacgtggccacaatattctctcttctagaannnnnnnnnnnnnnnnnnnccaaaaatatctttgttcttt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
47496255 |
tggttgaaattaaaacactcaagaaagactcacgtggccacaatattctctcttctaga-----------tttttttttccaaaaatatctttgttcttt |
47496343 |
T |
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| Q |
318 |
ccctgttttaacgaaaatctcttgtacctcactaacctttttaacatattaaatatatatttttgtaagcctgacatatgc |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47496344 |
ccctgttttaacgaaaatctcttgtacctcactaacctttttaacatattaaatatatatttttgtaagcctgacatatgc |
47496424 |
T |
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