View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1637_low_6 (Length: 419)
Name: NF1637_low_6
Description: NF1637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1637_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 3019270 - 3019441
Alignment:
| Q |
1 |
acatgaataaataaatagaaaggcatggaaggacatgaagagtggttagtttcattacataatgtccaagaagaagaaaacgtgtgtagattcaaacttt |
100 |
Q |
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| T |
3019270 |
acatgattaaataaatataaaggcattgaaggacatgaagagtggttagttacattacataatgaccaagaagaagaaaacgtgtgtagattcaaacttt |
3019369 |
T |
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| Q |
101 |
ttgtcacataaagcagcatgtagtgaacataacatggatttcccattctagggtttctctaaaatctaatta |
172 |
Q |
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| T |
3019370 |
ttgtcacataaagcagcatgtagtgaacataacatggatttcccattctagggtttctctaaaatctaatta |
3019441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 327 - 406
Target Start/End: Original strand, 3019598 - 3019677
Alignment:
| Q |
327 |
tggatttgaatcaatggatatgatgtgagttgagtggcgtggttcaattacattaacattacattacacagagagagaga |
406 |
Q |
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| T |
3019598 |
tggatttgaatcaatggatatgatgtgagttgagtggcgtggttcaattacattaacattacattacacagagagagaga |
3019677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 304
Target Start/End: Original strand, 3019536 - 3019575
Alignment:
| Q |
265 |
agtagtagttagatatgttagatggaatggaatgaaatga |
304 |
Q |
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| T |
3019536 |
agtagtagttagatatgttagatggaatggaatgaaatga |
3019575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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