View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1637_low_7 (Length: 389)
Name: NF1637_low_7
Description: NF1637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1637_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 3154792 - 3155146
Alignment:
| Q |
11 |
ttattctgtcctgtcagtgtatattgattgtggcatacacaattcattgttttatacatatttggagcaggcatcattcttcatggcgtatattgtggca |
110 |
Q |
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| T |
3154792 |
ttattctgtcctctcagtgtatattgattgtggcatacacaattcatagttttatacatatttggtgcaggcatcattcttcatggcgtatattgtggca |
3154891 |
T |
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| Q |
111 |
ttcggatggactaatatagcatcagaactttttcaattgattccactttcttacaattatgtaaatagatattttggtggaaactttagtgatgattttg |
210 |
Q |
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| T |
3154892 |
ttcggatggactaatatagcatcagaactttttcaattgattccactttcttacaattatgtaaatagatattttggtggaaactttagtgatgattttg |
3154991 |
T |
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| Q |
211 |
aagcaccatcaattccttactacagcgaaattcccaggattcttttctttggtcttcttggtgttacatactttatccttgctcctctcatactgccatt |
310 |
Q |
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| T |
3154992 |
aagcaccatcaattccttactacagcgaaattcccaggattcttttctttggtcttcttggtgttacatactttatccttgctcctctcatactgccatt |
3155091 |
T |
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| Q |
311 |
tatcttggtctacttttgtttgggatacatcatttaccgcaaccaggtttcacac |
365 |
Q |
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| T |
3155092 |
tatcttggtctacttttgtttgggatacatcatttaccgcaaccaggtttcacac |
3155146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 200 - 359
Target Start/End: Original strand, 4008338 - 4008497
Alignment:
| Q |
200 |
tgatgattttgaagcaccatcaattccttactacagcgaaattcccaggattcttttctttggtcttcttggtgttacatactttatccttgctcctctc |
299 |
Q |
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|||||||||||| | || |||||||||||| ||||||||||||||||||||| | |||| |||||||||||||| |||||||| | |||||||| ||| |
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| T |
4008338 |
tgatgattttgagcccccgtcaattccttaccacagcgaaattcccaggattcgtctcttcggtcttcttggtgtgacatacttctttcttgctccactc |
4008437 |
T |
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| Q |
300 |
atactgccatttatcttggtctacttttgtttgggatacatcatttaccgcaaccaggtt |
359 |
Q |
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||||| |||||| ||||| | ||||||||||||||||||||||||| ||||||||||||| |
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| T |
4008438 |
atacttccatttctcttgatttacttttgtttgggatacatcattttccgcaaccaggtt |
4008497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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