View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1647-INSERTION-1 (Length: 463)
Name: NF1647-INSERTION-1
Description: NF1647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1647-INSERTION-1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 8 - 463
Target Start/End: Original strand, 37601554 - 37602009
Alignment:
| Q |
8 |
aaaaataagctcattcaatcaattacctacaactttcacatacaagaaggaacccgttctaactaagttgctagctatatcaatatagagttcaagctta |
107 |
Q |
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| T |
37601554 |
aaaaataagctcattcaatcaattacctacaactttcacatacaagaaggaacccgttctaactaagttgctagctatatcaatatagagttcaagctta |
37601653 |
T |
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| Q |
108 |
accatggaaagatatgaaataattaaagatattggatcaggtaactttggtgttgcaaagcttataagggaaaaatggagtggcgagttatatgctgtca |
207 |
Q |
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| T |
37601654 |
accatggaaagatatgaaataattaaagatattggatcaggtaactttggtgttgcaaagcttataagggaaaaatggagtggcgagttatatgctgtca |
37601753 |
T |
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| Q |
208 |
agttcattgaaagaggctttaaggtccnnnnnnnnnaactccatataaatgaattttgcattgtgctccttttatgatgtttaaatttaatttaattcca |
307 |
Q |
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| T |
37601754 |
agttcattgaaagaggctttaaggtcttttttttttaactccatataaatgaattttgcattgtgctccttttatgatgtttaaatttaatttaattcca |
37601853 |
T |
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| Q |
308 |
tttggttttgtagattgatgagcacgtgcaaagggagattataaatcataggtcattgaagcatcccaatattgttagatttaaagaggtacttagaggt |
407 |
Q |
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| T |
37601854 |
tttggttttgtagattgatgagcacgtgcaaagggagattataaatcataggtcattgaagcatcccaatattgttagatttaaagaggtacttagaggt |
37601953 |
T |
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| Q |
408 |
tttaatagtgtcattattatgcatcctatttcttataagaatttatctggtgttat |
463 |
Q |
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| T |
37601954 |
tttaatagtgtcattattatgcatcctatttcttataagaatttacctggtgttat |
37602009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 319 - 398
Target Start/End: Original strand, 39410650 - 39410729
Alignment:
| Q |
319 |
agattgatgagcacgtgcaaagggagattataaatcataggtcattgaagcatcccaatattgttagatttaaagaggta |
398 |
Q |
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| T |
39410650 |
agattgatgagcatgttcaaagggagattataaatcataggtccttgaagcatcccaatatcattagatttaaagaggta |
39410729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 397
Target Start/End: Complemental strand, 27107793 - 27107715
Alignment:
| Q |
319 |
agattgatgagcacgtgcaaagggagattataaatcataggtcattgaagcatcccaatattgttagatttaaagaggt |
397 |
Q |
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| T |
27107793 |
agattgatgataatgtccaaagggaaatcatgaaccatagatcattgaagcatcctaatattgttaggttcaaagaggt |
27107715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 12309285 - 12309331
Alignment:
| Q |
336 |
caaagggagattataaatcataggtcattgaagcatcccaatattgt |
382 |
Q |
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| T |
12309285 |
caaagggaaattataaatcatagatcactgaggcatcccaatattgt |
12309331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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