View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1647-INSERTION-2 (Length: 542)
Name: NF1647-INSERTION-2
Description: NF1647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1647-INSERTION-2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 92 - 542
Target Start/End: Original strand, 40853385 - 40853838
Alignment:
| Q |
92 |
tcgaagactaacagataaatattaatttctcaagtaatcataggtgttagcgtgtctgtgtcatgtctagtggtggtgcatgtgtaagtgtgagtgattc |
191 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40853385 |
tcgaagacgaacatataaatattaatttctcaagtaatcataggtgttagcgtgtctgtgtcatgtctagtggtggtgcatgtgtaagtgtgagtgattc |
40853484 |
T |
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| Q |
192 |
atagtctctgtatttggagcactgactgattggaaggcgtgtgt--caccgtcacatgtcggtgttcgacac-gacacctgtcacacactggcgaatttg |
288 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
40853485 |
atagtctctgtagttggagcactgactgattggaaggcgtgtgtgtcaccgtcacatgtcggtgttcgacactgacacctgtcacgcactggcgaatttg |
40853584 |
T |
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| Q |
289 |
attacattcaatcatgctgttttctaaaattattgccggtgatgcgtcatcatagttaattattaatattcatattctgtttttgttgctgagaattgag |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40853585 |
attacattcaatcatgctgttttctaaaattattgccggtgatgcgtcatcatagttaattattaatattcatattctgtttttgttgctgagaattgag |
40853684 |
T |
|
| Q |
389 |
aaaggtatggtagaagagaagggcatagtgaaagatgttttgaacaacgaaagnnnnnnnntcgcttggg-tttgnnnnnnnnatgtcttatattttgaa |
487 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| ||| ||||||||||||||||| |
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| T |
40853685 |
aaaggtatggtagaagagaagggtatagtgaaagatgttttgaacaatgaaag-aaaaaaatcgcttgggtttttttttttttatgtcttatattttgaa |
40853783 |
T |
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| Q |
488 |
gtgatgttcagggattgtgacgcggaggccgttggtactgcaactgcacagaata |
542 |
Q |
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| T |
40853784 |
gtgatgttcagggattgtgacgcggaggccgttggtactgcaactgcacagaata |
40853838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 40853250 - 40853335
Alignment:
| Q |
7 |
aaatcgtcggtgttagagagtatcgttggacgtgattttcttccccgtggatcaggtgcattactgtcatcgttttcaccgttgtt |
92 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40853250 |
aaatcgtcggtgttagagagtatcgttggacgtgattttcttccccgtggatcaggtgcattactgtcatcgttttcaccattgtt |
40853335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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