View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1647-INSERTION-4 (Length: 117)

Name: NF1647-INSERTION-4
Description: NF1647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1647-INSERTION-4
NF1647-INSERTION-4
[»] chr7 (10 HSPs)
chr7 (10-117)||(2445751-2445858)
chr7 (10-106)||(26633343-26633445)
chr7 (12-71)||(30739105-30739166)
chr7 (10-73)||(40738010-40738075)
chr7 (10-64)||(9479107-9479163)
chr7 (30-71)||(18895418-18895459)
chr7 (10-56)||(36438387-36438435)
chr7 (30-91)||(8358291-8358356)
chr7 (29-98)||(26282532-26282605)
chr7 (16-93)||(11672572-11672655)
[»] chr2 (9 HSPs)
chr2 (17-88)||(12072487-12072558)
chr2 (28-106)||(27302510-27302592)
chr2 (15-117)||(33280257-33280359)
chr2 (10-71)||(36059926-36059989)
chr2 (10-71)||(39081378-39081441)
chr2 (10-106)||(1418889-1418991)
chr2 (29-99)||(15457501-15457575)
chr2 (16-93)||(25222309-25222392)
chr2 (10-50)||(38599382-38599424)
[»] chr4 (6 HSPs)
chr4 (10-106)||(43154770-43154872)
chr4 (10-106)||(21791529-21791631)
chr4 (29-106)||(5545330-5545411)
chr4 (13-106)||(10575505-10575604)
chr4 (30-105)||(45172628-45172707)
chr4 (11-106)||(35653962-35654063)
[»] chr3 (14 HSPs)
chr3 (13-117)||(21660479-21660583)
chr3 (13-99)||(4207347-4207433)
chr3 (10-71)||(42009283-42009346)
chr3 (7-106)||(36538168-36538273)
chr3 (10-64)||(46904722-46904778)
chr3 (16-100)||(13401445-13401535)
chr3 (30-71)||(54430554-54430595)
chr3 (10-100)||(7767043-7767139)
chr3 (11-71)||(1255071-1255133)
chr3 (30-98)||(8364174-8364246)
chr3 (11-71)||(19965901-19965963)
chr3 (17-56)||(35202754-35202793)
chr3 (28-71)||(43905864-43905907)
chr3 (30-98)||(51939546-51939618)
[»] chr6 (5 HSPs)
chr6 (13-83)||(31234896-31234966)
chr6 (13-83)||(31244033-31244102)
chr6 (30-106)||(6360762-6360842)
chr6 (30-93)||(7525161-7525228)
chr6 (13-88)||(15035784-15035860)
[»] chr5 (13 HSPs)
chr5 (30-106)||(29156192-29156272)
chr5 (14-79)||(37029045-37029110)
chr5 (29-100)||(10591261-10591336)
chr5 (29-100)||(17513924-17513999)
chr5 (29-106)||(931381-931457)
chr5 (10-71)||(138124-138187)
chr5 (11-93)||(19099309-19099397)
chr5 (29-106)||(43511619-43511700)
chr5 (32-71)||(7390421-7390460)
chr5 (13-83)||(524858-524927)
chr5 (30-93)||(13656212-13656279)
chr5 (31-71)||(33281677-33281717)
chr5 (16-93)||(13423850-13423933)
[»] chr8 (7 HSPs)
chr8 (29-90)||(5971758-5971819)
chr8 (29-106)||(34523933-34524014)
chr8 (16-73)||(42951788-42951847)
chr8 (10-106)||(3628729-3628831)
chr8 (29-100)||(12531560-12531635)
chr8 (29-106)||(29372358-29372439)
chr8 (16-93)||(43968065-43968148)
[»] chr1 (7 HSPs)
chr1 (29-100)||(5560484-5560559)
chr1 (10-52)||(26486405-26486449)
chr1 (30-106)||(50552497-50552578)
chr1 (11-98)||(6333506-6333598)
chr1 (30-106)||(12884119-12884199)
chr1 (29-100)||(12971407-12971482)
chr1 (10-56)||(44836757-44836805)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 4e-45; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 4e-45
Query Start/End: Original strand, 10 - 117
Target Start/End: Complemental strand, 2445858 - 2445751
Alignment:
Q  10 ttgatgctatcaaaccattcaatttgtataatcacttaatctgtcaaattaaaaagttattttaaagaatcacaccaatcatttatttttcgtataattt 109  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||    
T  2445858 ttgatgctatcaaaccattcaatttgtataatcacttaatctatcaaattaaaaggttatttcaaagaatcacaccaattatttatttttcgtataattt 2445759  T
Q  110 agttttta 117  Q
    ||||||||    
T  2445758 agttttta 2445751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 26633343 - 26633445
Alignment:
Q  10 ttgatgctatcaaaccat--tcaatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcatttatttttcgta 103  Q
    |||||||||| ||||||   ||||||||||||||||||||||| ||||| || ||||| |||    || ||||||||||| ||||||||| ||||||| |    
T  26633343 ttgatgctataaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttctttttcgca 26633442  T
Q  104 taa 106  Q
    |||    
T  26633443 taa 26633445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 30739105 - 30739166
Alignment:
Q  12 gatgctatcaaaccat--tcaatttgtataatcacttaatctgtcaaattaaaaagttattt 71  Q
    ||||||||||||||||  ||||||| ||||||||||||||| ||||| || |||||||||||    
T  30739105 gatgctatcaaaccatcttcaatttttataatcacttaatcagtcaatttgaaaagttattt 30739166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 40738075 - 40738010
Alignment:
Q  10 ttgatgctatcaaaccat--tcaatttgtataatcacttaatctgtcaaattaaaaagttatttta 73  Q
    |||||||||||||||||   |||||||||||||| |||||||| ||||| |||||||| |||||||    
T  40738075 ttgatgctatcaaaccaccatcaatttgtataattacttaatcagtcaatttaaaaagctatttta 40738010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 9479107 - 9479163
Alignment:
Q  10 ttgatgctatcaaaccat--tcaatttgtataatcacttaatctgtcaaattaaaaa 64  Q
    |||||||||||||||||   |||||||||||||| |||||||| ||||| |||||||    
T  9479107 ttgatgctatcaaaccaccatcaatttgtataattacttaatcagtcaatttaaaaa 9479163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 18895459 - 18895418
Alignment:
Q  30 aatttgtataatcacttaatctgtcaaattaaaaagttattt 71  Q
    |||||||||||||| |||||| ||||| ||||||||||||||    
T  18895459 aatttgtataatcaattaatcagtcaatttaaaaagttattt 18895418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 36438435 - 36438387
Alignment:
Q  10 ttgatgctatcaaaccatt--caatttgtataatcacttaatctgtcaa 56  Q
    ||||||||||||||||| |  |||||||||||||||||||||| |||||    
T  36438435 ttgatgctatcaaaccactatcaatttgtataatcacttaatcagtcaa 36438387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 8358356 - 8358291
Alignment:
Q  30 aatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcat 91  Q
    ||||| ||||||||||||||| ||||| ||||||||||||    || ||||||||||| |||||||    
T  8358356 aatttatataatcacttaatcagtcaatttaaaaagttatctcattgaaagaatcacaacaatcat 8358291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 26282605 - 26282532
Alignment:
Q  29 caatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcatttatttt 98  Q
    |||||||||||||||||||||| ||||| || ||||| |||    || ||||||||||| ||||||||| ||||    
T  26282605 caatttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttttttt 26282532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 11672572 - 11672655
Alignment:
Q  16 ctatcaaaccattc--aatttgtataatcacttaatctgtcaaattaaaaagttatt----ttaaagaatcacaccaatcattt 93  Q
    ||||||||||| ||  ||||||||||||||||||||| ||||| ||  |||||||||    | ||||||||||| |||||||||    
T  11672572 ctatcaaaccactcctaatttgtataatcacttaatcagtcaatttggaaagttatttcaatgaaagaatcacaacaatcattt 11672655  T

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Target: chr2 (Bit Score: 48; Significance: 7e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 7e-19
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 12072487 - 12072558
Alignment:
Q  17 tatcaaaccattcaatttgtataatcacttaatctgtcaaattaaaaagttattttaaagaatcacaccaat 88  Q
    |||||||||||||||||| |||||||||||||||  |||| |||||||||||||| ||||||||||| ||||    
T  12072487 tatcaaaccattcaatttatataatcacttaatcaatcaatttaaaaagttatttcaaagaatcacaacaat 12072558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 27302592 - 27302510
Alignment:
Q  28 tcaatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcatttatttttcgtataa 106  Q
    ||||||||||||||||||||||| ||||| || ||||| |||    || ||||||||||| ||||||||||||||||| ||||    
T  27302592 tcaatttgtataatcacttaatcggtcaatttgaaaagctatatcattaaaagaatcacaacaatcatttatttttcgcataa 27302510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 33280359 - 33280257
Alignment:
Q  15 gctatcaaaccattcaatttgtataatcacttaatctgtcaaattaaaaagttattttaaagaatcacaccaatcatttatttttcgtataatttagttt 114  Q
    ||||||||| ||| |||||| |||||| |||| |||  |||| |||||||  |||||||||||||||||| ||   | ||||||||| ||||||| ||||    
T  33280359 gctatcaaatcatccaatttctataattacttgatcaatcaatttaaaaaactattttaaagaatcacactaaaattatatttttcgcataattttgttt 33280260  T
Q  115 tta 117  Q
    |||    
T  33280259 tta 33280257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 36059989 - 36059926
Alignment:
Q  10 ttgatgctatcaaaccat--tcaatttgtataatcacttaatctgtcaaattaaaaagttattt 71  Q
    |||||||||||||||||   ||||||||||||||||||||||| || || |||||||| |||||    
T  36059989 ttgatgctatcaaaccaccatcaatttgtataatcacttaatcagttaatttaaaaagctattt 36059926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 39081378 - 39081441
Alignment:
Q  10 ttgatgctatcaaaccat--tcaatttgtataatcacttaatctgtcaaattaaaaagttattt 71  Q
    |||||||||||||||||   ||||||||||||||||||||||| ||||| || ||||| |||||    
T  39081378 ttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaagctattt 39081441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 1418889 - 1418991
Alignment:
Q  10 ttgatgctatcaaaccat--tcaatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcatttatttttcgta 103  Q
    |||||||||||||||||   ||||||||||||||||||||||| ||||| ||  |||| |||    || ||||||||||| |||| |||| ||||||| |    
T  1418889 ttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgtaaagctatttcattgaaagaatcacaacaattatttctttttcgca 1418988  T
Q  104 taa 106  Q
    |||    
T  1418989 taa 1418991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 15457501 - 15457575
Alignment:
Q  29 caatttgtataatcacttaatctgtcaaattaaaaagttatttt----aaagaatcacaccaatcatttattttt 99  Q
    |||||||||||||||||||||| ||||| || ||||| ||||||    ||||||||||| |||| |||| |||||    
T  15457501 caatttgtataatcacttaatcagtcaatttgaaaagctattttattgaaagaatcacaacaataattttttttt 15457575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 25222309 - 25222392
Alignment:
Q  16 ctatcaaaccattc--aatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcattt 93  Q
    |||||||| |||||  ||||||||||||||||||||  ||||| ||| ||||||||    || ||||||||||| |||||||||    
T  25222309 ctatcaaatcattcctaatttgtataatcacttaattagtcaatttagaaagttatttcattgaaagaatcacaacaatcattt 25222392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 38599382 - 38599424
Alignment:
Q  10 ttgatgctatcaaaccatt--caatttgtataatcacttaatc 50  Q
    |||||||||||||| ||||  ||||||||||||||||||||||    
T  38599382 ttgatgctatcaaatcattatcaatttgtataatcacttaatc 38599424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 3e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 43154872 - 43154770
Alignment:
Q  10 ttgatgctatcaaaccat--tcaatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcatttatttttcgta 103  Q
    |||||||||||||||||   ||||||||||||||||||||||| ||||| ||||||||||||    || ||||||||||| |||| |||||||||||| |    
T  43154872 ttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttaaaaagttatttcattaaaagaatcacaacaattatttatttttcgca 43154773  T
Q  104 taa 106  Q
    |||    
T  43154772 taa 43154770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 21791631 - 21791529
Alignment:
Q  10 ttgatgctatcaaacca--ttcaatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcatttatttttcgta 103  Q
    ||||||| |||||||||  |||||| ||||||||||||||||| ||||| || |||||||||    || ||||||||||| ||||||||| ||||||| |    
T  21791631 ttgatgccatcaaaccaccttcaatgtgtataatcacttaatcagtcaatttgaaaagttatttcattgaaagaatcacaacaatcatttctttttcgca 21791532  T
Q  104 taa 106  Q
    |||    
T  21791531 taa 21791529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 5545330 - 5545411
Alignment:
Q  29 caatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcatttatttttcgtataa 106  Q
    |||||||||||||||||||||| ||||| ||  |||| |||    || ||||||||||| ||||||||||||||||| ||||    
T  5545330 caatttgtataatcacttaatcggtcaatttggaaagctatttcattaaaagaatcacaacaatcatttatttttcgcataa 5545411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 10575604 - 10575505
Alignment:
Q  13 atgctatcaaaccat--tcaatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcatttatttttcgtataa 106  Q
    ||||||||||||||   |||| |||||||||||||||||| ||||| ||| ||||||||    || ||| ||||||| ||||||||| ||||||| ||||    
T  10575604 atgctatcaaaccaccctcaacttgtataatcacttaatcagtcaatttagaaagttatttcattgaaataatcacaacaatcatttctttttcgcataa 10575505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 45172707 - 45172628
Alignment:
Q  30 aatttgtataatcacttaatctgtcaaattaaaaagttattt----taaagaatcacaccaatcatttatttttcgtata 105  Q
    ||||||||||||||||||||| ||||| || ||||| |||||     ||||||||||| ||||||||| |||||| ||||    
T  45172707 aatttgtataatcacttaatcagtcaatttgaaaagctatttcatggaaagaatcacaacaatcatttctttttcatata 45172628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 35654063 - 35653962
Alignment:
Q  11 tgatgctatcaaaccat--tcaatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcatttatttttcgtat 104  Q
    ||||||||||||||||   |||||||||||||||||||||||  |||| || ||||| |||    || ||||||||||| |||| |||| ||||||| ||    
T  35654063 tgatgctatcaaaccaccatcaatttgtataatcacttaatcaatcaatttgaaaagctatttcattgaaagaatcacaacaattatttctttttcgcat 35653964  T
Q  105 aa 106  Q
    ||    
T  35653963 aa 35653962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 4e-17; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 21660479 - 21660583
Alignment:
Q  13 atgctatcaaaccattcaatttgtataatcacttaatctgtcaaattaaaaagttattttaaagaatcacaccaatcatttatttttcgtataatttagt 112  Q
    |||||||||||||||  ||| |||||||||||||||||  |||| ||||||| |||||| |||||||||||  |||| ||| ||||||| ||||||  ||    
T  21660479 atgctatcaaaccatcaaatctgtataatcacttaatcaatcaatttaaaaaattatttcaaagaatcacaataatcctttctttttcgcataattgtgt 21660578  T
Q  113 tttta 117  Q
    |||||    
T  21660579 tttta 21660583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 4207433 - 4207347
Alignment:
Q  13 atgctatcaaaccattcaatttgtataatcacttaatctgtcaaattaaaaagttattttaaagaatcacaccaatcatttattttt 99  Q
    ||||||||||||||| ||||||||||||||||||||||  |||| ||  |||| ||||| ||||||||||| ||||| ||| |||||    
T  4207433 atgctatcaaaccatccaatttgtataatcacttaatcattcaatttggaaagatatttcaaagaatcacaacaatcctttcttttt 4207347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 42009346 - 42009283
Alignment:
Q  10 ttgatgctatcaaaccat--tcaatttgtataatcacttaatctgtcaaattaaaaagttattt 71  Q
    |||||||||||||||||   ||||||||||||||||||||||| ||||| ||||||||||||||    
T  42009346 ttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttaaaaagttattt 42009283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 36538273 - 36538168
Alignment:
Q  7 aacttgatgctatcaaaccat--tcaatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcatttatttttc 100  Q
    ||||||||||||||||||||   ||||||||||||||||||||||| ||||| || ||||  |||    || ||||||||||| |||| |||| ||||||    
T  36538273 aacttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaattatttctttttc 36538174  T
Q  101 gtataa 106  Q
    | ||||    
T  36538173 gcataa 36538168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 46904722 - 46904778
Alignment:
Q  10 ttgatgctatcaaaccat--tcaatttgtataatcacttaatctgtcaaattaaaaa 64  Q
    |||||||||||||||||   ||||||||||||||||||||||| ||||| |||||||    
T  46904722 ttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttaaaaa 46904778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 13401445 - 13401535
Alignment:
Q  16 ctatcaaaccattc--aatttgtataatcacttaatctgtcaaattaaaaagttatttta----aagaatcacaccaatcatttatttttc 100  Q
    ||||||||||| ||  ||||||||||||||||||||| ||||| || ||||| ||||| |    |||||||||| ||||||||| ||||||    
T  13401445 ctatcaaaccactcttaatttgtataatcacttaatcagtcaatttgaaaagctatttcattggaagaatcacaacaatcatttttttttc 13401535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 54430554 - 54430595
Alignment:
Q  30 aatttgtataatcacttaatctgtcaaattaaaaagttattt 71  Q
    ||||||||||||||||||||| ||||| || |||||||||||    
T  54430554 aatttgtataatcacttaatcagtcaatttgaaaagttattt 54430595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 100
Target Start/End: Original strand, 7767043 - 7767139
Alignment:
Q  10 ttgatgctatcaaaccat--tcaatttgtataatcacttaatctgtcaaattaaaaagttatttta----aagaatcacaccaatcatttatttttc 100  Q
    ||||||||||||||| |   ||||||||||||||||||||||| ||||| || ||||| ||||| |    |||||||||| |||| |||| ||||||    
T  7767043 ttgatgctatcaaacaaccatcaatttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaattatttttttttc 7767139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 1255133 - 1255071
Alignment:
Q  11 tgatgctatcaaacca--ttcaatttgtataatcacttaatctgtcaaattaaaaagttattt 71  Q
    |||||||||||||| |  || |||||||||||| |||||||| ||||| ||| ||||||||||    
T  1255133 tgatgctatcaaacgacctttaatttgtataatgacttaatcggtcaatttagaaagttattt 1255071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 8364174 - 8364246
Alignment:
Q  30 aatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcatttatttt 98  Q
    ||||||||||||||||||||| ||||| ||  ||||||||    || ||||||||||| ||||||||| ||||    
T  8364174 aatttgtataatcacttaatcagtcaatttggaaagttatttcattgaaagaatcacaacaatcatttttttt 8364246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 19965963 - 19965901
Alignment:
Q  11 tgatgctatcaaaccatt--caatttgtataatcacttaatctgtcaaattaaaaagttattt 71  Q
    |||||||||||||||| |  |||||||||||||||||||||  || ||||| ||||| |||||    
T  19965963 tgatgctatcaaaccactgccaatttgtataatcacttaattagttaaattgaaaagctattt 19965901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 35202793 - 35202754
Alignment:
Q  17 tatcaaaccattcaatttgtataatcacttaatctgtcaa 56  Q
    ||||||||||| ||||||||||||| |||||||| |||||    
T  35202793 tatcaaaccatccaatttgtataattacttaatcagtcaa 35202754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 43905907 - 43905864
Alignment:
Q  28 tcaatttgtataatcacttaatctgtcaaattaaaaagttattt 71  Q
    |||||||||||||||||| |||| ||||| || |||||||||||    
T  43905907 tcaatttgtataatcactcaatcagtcaatttgaaaagttattt 43905864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 51939618 - 51939546
Alignment:
Q  30 aatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcatttatttt 98  Q
    ||||||||||||||||||||| ||||| || ||||| |||    || ||||||||||| ||||||||| ||||    
T  51939618 aatttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttttttt 51939546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 6e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 31234896 - 31234966
Alignment:
Q  13 atgctatcaaaccattcaatttgtataatcacttaatctgtcaaattaaaaagttattttaaagaatcaca 83  Q
    ||||||||||||||| ||||||||||||||||||||||  |||| || ||||| ||||| |||||||||||    
T  31234896 atgctatcaaaccatccaatttgtataatcacttaatcaatcaatttgaaaagctatttcaaagaatcaca 31234966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 31244033 - 31244102
Alignment:
Q  13 atgctatcaaaccattcaatttgtataatcacttaatctgtcaaattaaaaagttattttaaagaatcaca 83  Q
    ||||||||||||||| ||||||||||||||||||||||  || |||| ||||| ||||| |||||||||||    
T  31244033 atgctatcaaaccatccaatttgtataatcacttaatcaatc-aattgaaaagctatttcaaagaatcaca 31244102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 6360762 - 6360842
Alignment:
Q  30 aatttgtataatcacttaatctgtcaaattaaaaagttat---tttaaagaatcacaccaatcatttattt-ttcgtataa 106  Q
    ||||||||||||||||||||| ||||| || |||||||||   || ||||||||||| ||||||||| ||| |||||||||    
T  6360762 aatttgtataatcacttaatcagtcaatttgaaaagttattcattgaaagaatcacaacaatcatttttttcttcgtataa 6360842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 7525228 - 7525161
Alignment:
Q  30 aatttgtataatcacttaatctgtcaaattaaaaagttatttt----aaagaatcacaccaatcattt 93  Q
    ||||||||||||||||||||| ||||| ||  |||||||||||    ||||||||||| |||||||||    
T  7525228 aatttgtataatcacttaatcagtcaatttggaaagttattttattgaaagaatcacaacaatcattt 7525161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 15035860 - 15035784
Alignment:
Q  13 atgctatcaaaccattcaa-tttgtataatcacttaatctgtcaaattaaaaagttattttaaagaatcacaccaat 88  Q
    ||||||||||||||||||| |||||||||||| |||| | ||||| || ||||| |  || ||||||||||| ||||    
T  15035860 atgctatcaaaccattcaattttgtataatcatttaaccagtcaatttgaaaagctgattcaaagaatcacaacaat 15035784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000004; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 29156192 - 29156272
Alignment:
Q  30 aatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcatttatttttcgtataa 106  Q
    ||||||||||||||||||||| ||||| ||||||||||||    || ||||||||||| ||||||||| |||||| |||||    
T  29156192 aatttgtataatcacttaatcagtcaatttaaaaagttatttcattgaaagaatcacaacaatcatttctttttcatataa 29156272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 37029110 - 37029045
Alignment:
Q  14 tgctatcaaaccattcaatttgtataatcacttaatctgtcaaattaaaaagttattttaaagaat 79  Q
    |||||||||| ||| ||||||||||||||||||||||  |||| |||||||| ||||| |||||||    
T  37029110 tgctatcaaatcatccaatttgtataatcacttaatcaatcaatttaaaaagctatttcaaagaat 37029045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 10591336 - 10591261
Alignment:
Q  29 caatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcatttatttttc 100  Q
    |||||||||||||||||||||| || || || |||||||||    || ||||||||||| ||||||||||||||||    
T  10591336 caatttgtataatcacttaatcagttaatttgaaaagttatttcattgaaagaatcacaacaatcatttatttttc 10591261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 17513999 - 17513924
Alignment:
Q  29 caatttgtataatcacttaatctgtcaaattaaaaagttatt----ttaaagaatcacaccaatcatttatttttc 100  Q
    |||||||||||||||||||||| ||||| || ||||||||||    | ||||||||||| ||||||||| ||||||    
T  17513999 caatttgtataatcacttaatcagtcaatttgaaaagttatttcactgaaagaatcacaacaatcatttctttttc 17513924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 931381 - 931457
Alignment:
Q  29 caatttgtataatcacttaatctgtcaaattaaaaagttattttaaagaatcacaccaatcatttatttttcgtataa 106  Q
    |||||||||||||||||||||| ||||| ||| |||| || || |||||||||||  |||||||| ||||||| ||||    
T  931381 caatttgtataatcacttaatcagtcaatttagaaagcta-ttgaaagaatcacaataatcatttctttttcgcataa 931457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 138124 - 138187
Alignment:
Q  10 ttgatgctatcaaaccat--tcaatttgtataatcacttaatctgtcaaattaaaaagttattt 71  Q
    |||||||||||||||||   ||||||||||||||||||||||| ||||| || ||||| |||||    
T  138124 ttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaagctattt 138187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 19099397 - 19099309
Alignment:
Q  11 tgatgctatcaaaccattc--aatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcattt 93  Q
    |||| |||||||||||| |  ||||||||||||||||||||| ||||| |||||||| |||    || ||||||||||| |||||||||    
T  19099397 tgatcctatcaaaccatccctaatttgtataatcacttaatcagtcaatttaaaaagctatttcattgaaagaatcacaacaatcattt 19099309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 43511619 - 43511700
Alignment:
Q  29 caatttgtataatcacttaatctgtcaaattaaaaagttattt----taaagaatcacaccaatcatttatttttcgtataa 106  Q
    |||||||||||||||||||||| ||||| || ||||| |||||     ||||||||||| ||||||||| |||||| |||||    
T  43511619 caatttgtataatcacttaatcagtcaatttgaaaagctatttcatggaaagaatcacaacaatcatttctttttcatataa 43511700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 7390460 - 7390421
Alignment:
Q  32 tttgtataatcacttaatctgtcaaattaaaaagttattt 71  Q
    ||||||||||||||||||| ||||| ||||||||||||||    
T  7390460 tttgtataatcacttaatcagtcaatttaaaaagttattt 7390421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 524927 - 524858
Alignment:
Q  13 atgctatcaaaccattcaatttgtataatcacttaatctgtcaaattaaaaagttattttaaagaatcaca 83  Q
    ||||| |||||||||  ||||| |||||||||||||||  |||| |||||||  |||||||||||||||||    
T  524927 atgctctcaaaccatctaattt-tataatcacttaatcaatcaatttaaaaaactattttaaagaatcaca 524858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 30 - 93
Target Start/End: Original strand, 13656212 - 13656279
Alignment:
Q  30 aatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcattt 93  Q
    ||||||||||||||||||||| ||||| || |||||||||    || ||||||||||| |||||||||    
T  13656212 aatttgtataatcacttaatcagtcaatttgaaaagttatttcattgaaagaatcacaacaatcattt 13656279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 33281677 - 33281717
Alignment:
Q  31 atttgtataatcacttaatctgtcaaattaaaaagttattt 71  Q
    |||||||||||||||||||  ||||| ||||||||||||||    
T  33281677 atttgtataatcacttaattagtcaatttaaaaagttattt 33281717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 13423850 - 13423933
Alignment:
Q  16 ctatcaaaccattc--aatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcattt 93  Q
    ||||||||||||||  |||||||||||||||||||||  |||| ||| |||| |||    || ||||||||||| |||||||||    
T  13423850 ctatcaaaccattcctaatttgtataatcacttaatcaatcaatttagaaagctatttcattgaaagaatcacaacaatcattt 13423933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.0000000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 5971819 - 5971758
Alignment:
Q  29 caatttgtataatcacttaatctgtcaaattaaaaagttattttaaagaatcacaccaatca 90  Q
    |||||| ||| ||||||||||| ||||| |||||||| ||||||||||||||||| ||||||    
T  5971819 caatttctatcatcacttaatcagtcaatttaaaaagctattttaaagaatcacaacaatca 5971758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 34524014 - 34523933
Alignment:
Q  29 caatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcatttatttttcgtataa 106  Q
    |||||||||||||||||||||| ||||| || ||||| |||    || ||||||||||| ||||||||| |||||| |||||    
T  34524014 caatttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatcatttctttttcatataa 34523933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 42951847 - 42951788
Alignment:
Q  16 ctatcaaaccattc--aatttgtataatcacttaatctgtcaaattaaaaagttatttta 73  Q
    ||||||||||| ||  ||||||||||||||||||||| ||||| || |||||||||||||    
T  42951847 ctatcaaaccactcctaatttgtataatcacttaatcagtcaatttgaaaagttatttta 42951788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 3628831 - 3628729
Alignment:
Q  10 ttgatgctatcaaaccat--tcaatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcatttatttttcgta 103  Q
    |||||||||||||||||   | ||||||||||||||| ||||| ||||| || |||||||||    || ||||||||||| |||| |||| ||||||| |    
T  3628831 ttgatgctatcaaaccaccattaatttgtataatcacataatcagtcaatttgaaaagttatttcattgaaagaatcacaacaattatttctttttcgca 3628732  T
Q  104 taa 106  Q
    |||    
T  3628731 taa 3628729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 12531560 - 12531635
Alignment:
Q  29 caatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcatttatttttc 100  Q
    |||||||||||||||||||||| ||||| |||||||  |||    || ||||||||||| ||||||||| ||||||    
T  12531560 caatttgtataatcacttaatcagtcaatttaaaaatctatttcattgaaagaatcacaacaatcatttctttttc 12531635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 29372358 - 29372439
Alignment:
Q  29 caatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcatttatttttcgtataa 106  Q
    ||||||||||||||| |||||| ||||| ||  ||||||||    || ||||||| ||| ||||||||||||||||| ||||    
T  29372358 caatttgtataatcatttaatcagtcaatttggaaagttattcaattgaaagaatgacaacaatcatttatttttcgcataa 29372439  T

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Target: chr8; HSP #7
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 43968148 - 43968065
Alignment:
Q  16 ctatcaaaccattc--aatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcattt 93  Q
    ||||||||||| ||  |||||||||||||||||||||  |||| || |||||||||    || ||||||||||| |||||||||    
T  43968148 ctatcaaaccactcctaatttgtataatcacttaatcaatcaatttgaaaagttatttcattgaaagaatcacaacaatcattt 43968065  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 5560484 - 5560559
Alignment:
Q  29 caatttgtataatcacttaatctgtcaaattaaaaagttatttta----aagaatcacaccaatcatttatttttc 100  Q
    |||||||||||||||||||||| ||||| |||||||||||||| |    |||||||||| ||||||| | ||||||    
T  5560484 caatttgtataatcacttaatcagtcaatttaaaaagttatttcattgaaagaatcacaacaatcatatttttttc 5560559  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 26486449 - 26486405
Alignment:
Q  10 ttgatgctatcaaaccat--tcaatttgtataatcacttaatctg 52  Q
    ||||||||||||||||||  |||||||||||||||||||||||||    
T  26486449 ttgatgctatcaaaccatcatcaatttgtataatcacttaatctg 26486405  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 50552497 - 50552578
Alignment:
Q  30 aatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcatttattt-ttcgtataa 106  Q
    ||||||||||||||||||||| ||||| || |||||||||    || ||||||||||| ||||||||| ||| |||||||||    
T  50552497 aatttgtataatcacttaatcggtcaatttgaaaagttatttcattgaaagaatcacaacaatcatttttttcttcgtataa 50552578  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 6333598 - 6333506
Alignment:
Q  11 tgatgctatcaaaccattc-aatttgtataatcacttaatctgtcaaattaaaaagttatttt----aaagaatcacaccaatcatttatttt 98  Q
    |||| |||||||||||| | ||| |||| |||||||||||| ||||||||  |||||||||||    ||||||||||| ||||||||| ||||    
T  6333598 tgatactatcaaaccatcctaatctgtaaaatcacttaatcagtcaaattggaaagttattttattaaaagaatcacaacaatcatttttttt 6333506  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 12884199 - 12884119
Alignment:
Q  30 aatttgtataatcacttaatctgtcaaattaaaaagttat----tttaaagaatcacaccaatcatttatttttcgtataa 106  Q
    ||||||||||||||||||||| ||||| |||||||| |||    || ||||||||||| ||||||||| || |||| ||||    
T  12884199 aatttgtataatcacttaatcagtcaatttaaaaagctatttcattgaaagaatcacaacaatcattttttcttcgcataa 12884119  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 12971407 - 12971482
Alignment:
Q  29 caatttgtataatcacttaatctgtcaaattaaaaagttattt----taaagaatcacaccaatcatttatttttc 100  Q
    |||||||||||||||||||||| ||||| || ||||| |||||     ||||||||||| ||||||||| ||||||    
T  12971407 caatttgtataatcacttaatcagtcaatttgaaaagctatttcatcgaaagaatcacaacaatcatttctttttc 12971482  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 44836805 - 44836757
Alignment:
Q  10 ttgatgctatcaaaccat--tcaatttgtataatcacttaatctgtcaa 56  Q
    |||||||||||||||||   ||||||||||||||||||||||| |||||    
T  44836805 ttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaa 44836757  T

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