View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1647-INSERTION-5 (Length: 374)
Name: NF1647-INSERTION-5
Description: NF1647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1647-INSERTION-5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 32243953 - 32243598
Alignment:
| Q |
19 |
gagtgatacttaattctatacctcctatnnnnnnnngttgtaaagagtagtaactaatcatgtttctcagtcttcgcgatggtacaaccactcttggact |
118 |
Q |
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| T |
32243953 |
gagtgatacttaattctatacctcctataaaaaaagttagtaaagagtagtaactaatcatgtttctcagtcttcgcgatagtacaaccactcttggact |
32243854 |
T |
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| Q |
119 |
caggcttcttccttgcatgtataacccaacagagaatgtaacccataaaggccccaagcaccagtacacttcctccttggacataccgagataatgtagc |
218 |
Q |
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| T |
32243853 |
caggcttcttccttgcatgtataacccaacagagaatgtaacccataaaggccccaagcaccagtacacttcctccttggacataccgggataatgtagc |
32243754 |
T |
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| Q |
219 |
tccttcaatcaaacctttaggtttatcactaccaatatcgacattaatattaccattgaaaacttctccagatgccataatttccaatgtgtcatgcacc |
318 |
Q |
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| T |
32243753 |
ttcttcaatcaaacctttaggtttagcactaccaatatcgacattaatattaccattgaaaacttctccagatgccataatttccaatgtgtcatgcacc |
32243654 |
T |
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| Q |
319 |
tcgccatcatgatttccaacataagaaaccacgagcttctgctttgtagccactag |
374 |
Q |
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| T |
32243653 |
tcgccatcatgatttccaacataagaaaccacgagcttctgctttgtagccactag |
32243598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 69 - 370
Target Start/End: Complemental strand, 32249003 - 32248683
Alignment:
| Q |
69 |
taactaatcatgtttc-tcagtcttcgcgatggtacaaccactcttggactcaggct---tcttccttgcatgtataacccaacagagaatgtaacccat |
164 |
Q |
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|||||||||||||||| ||||||||| || | || |||||||| ||||||| |||| ||||||| |||||| ||| ||| |||||||| ||||| |
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| T |
32249003 |
taactaatcatgtttcctcagtcttcacggggctaaaaccactcctggactcgggctgcttcttcctagcatgtgaaacgaaaccaagaatgtagcccat |
32248904 |
T |
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| Q |
165 |
aaaggccccaagcaccagtacacttcctccttggacataccgagataatgtagctccttcaatcaaacctttaggtttatcactaccaatatcgacatta |
264 |
Q |
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||||||||||||||| |||||||||||||| |||||||||| || || || | | ||| |||| ||||| ||||||| ||||||||||| || ||||| |
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| T |
32248903 |
aaaggccccaagcactagtacacttcctccctggacataccacgacaacgtggattctttaatctgaccttcaggtttagcactaccaataccgccatta |
32248804 |
T |
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| Q |
265 |
atatta---------------ccattgaaaacttctccagatgccataatttccaatgtgtcatgcacctcgccatcatgatttccaacataagaaacca |
349 |
Q |
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| T |
32248803 |
acattatcgttaccaccaccaccactaacaacttctccagattccagaatctccaatgtgtcatgcacctcgccatcatgattaccaacataagaaatca |
32248704 |
T |
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| Q |
350 |
cgagcttctgctttgtagcca |
370 |
Q |
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|||| |||||||||||||||| |
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| T |
32248703 |
cgagattctgctttgtagcca |
32248683 |
T |
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