View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1647-INSERTION-6 (Length: 576)
Name: NF1647-INSERTION-6
Description: NF1647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1647-INSERTION-6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 7 - 576
Target Start/End: Original strand, 10036965 - 10037534
Alignment:
| Q |
7 |
atttttcttatgtttacatatttaaataattgtaaattagttgataatagttaaagtttttactagtcatttaaaaaagctattgtaatttgtgactcct |
106 |
Q |
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| T |
10036965 |
atttttcttatgtttacatatttaaataattgtaaattagttgataattgttaaagtttttactagtcatttaaaaaagctattgtgatttgtgactcct |
10037064 |
T |
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| Q |
107 |
cattcggaacatcttaacatttttctctctttaaaactttgctacattttgagggaatccaataatttattgggctagttggtatatagaatattaatgt |
206 |
Q |
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| T |
10037065 |
catttggaacatcttaacatttttctctctttaaaactttgctacattttgagggaatcaaataatttattgggctagttggtatatagaatatttatgt |
10037164 |
T |
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| Q |
207 |
agaaagtttcaacacttatttttgagtggctatgtctgccaccataaaagagtgaacaaaaggagagaggtaaagcaatagtgtcacatgcttatcactt |
306 |
Q |
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| T |
10037165 |
agaaagcttcaacacttatttttgagtagctatgtctgccaccataaaagagtgaacaaaaggagagaggtaaagcaatagtgtcacatgcttatcactt |
10037264 |
T |
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| Q |
307 |
cagggatgcttttgaatcaacattgcacgaagaactctgcaatttcctaaaaattcaagaatgctcaagatatgtacggccctaaaatccaaactacttt |
406 |
Q |
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| T |
10037265 |
ctgggatgcttttgaatcaacattgcacgaagaactctgcaatttcctaaaaattcaagaatgctcaagatatgtacggccctagaatccaaactacttt |
10037364 |
T |
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| Q |
407 |
agtcactctataatatatctttaaccacatcactccaaaaacaacaaattttaaatttcccctgcagaatcattgcctagtatttaatcattgtaatatt |
506 |
Q |
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| T |
10037365 |
agtcactctataatatatctttaaccacatcactccaaaaacaacaaattttaaatttcccctgcagaatcattgcctagtatttaatcattgtaatatt |
10037464 |
T |
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| Q |
507 |
aatacatgctgtgagtacacgtcaatgtgatggtttgatgaatttgcattgctatattgatgatcaagta |
576 |
Q |
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| T |
10037465 |
aatacttgctgtgagtacacgtcaatgtgatggtctgatgaatttgcattgctatattgatgatcaagta |
10037534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 7 - 576
Target Start/End: Original strand, 10097345 - 10097919
Alignment:
| Q |
7 |
atttttcttatgtttacatatttaaataattgtaaattagttgataatagttaaagtttttactagtcatttaaaaaagctat----tgtaatttgtgac |
102 |
Q |
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| T |
10097345 |
atttttcttatgtttacatatttaaataattgtaaattagttgataattgt---agtttttactagtcatttaaaaaagctatatattgtgatctgtgac |
10097441 |
T |
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| Q |
103 |
tcctcattcggaacatcttaacatttttctctctttaaaactttgctacattttgagggaatccaataatttattgggctagttggtatatagaatatta |
202 |
Q |
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| T |
10097442 |
tcctcatttggaacatcttaacatttttctctctttaaaactttgctacattttgagggaatcaaataatttattgggctagttggtatatagaatattt |
10097541 |
T |
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| Q |
203 |
atgta----gaaagtttcaacacttatttttgagtggctatgtctgccaccataaaagagtgaacaaaaggagagaggtaaagcaatagtgtcacatgct |
298 |
Q |
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| T |
10097542 |
atgtacgtagaaagcttcaacacttatttttgagtagctatgtctgccaccataaaagagtgaacaaaaggagagaggtaaagcaatagtgtcacatgct |
10097641 |
T |
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| Q |
299 |
tatcacttcagggatgcttttgaatcaacattgcacgaagaactctgcaatttcctaaaaattcaagaatgctcaagatatgtacggccctaaaatccaa |
398 |
Q |
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| T |
10097642 |
tatcacttctgggatgcttttgaatcaacattgcacgaagaactctgcaatttcctaaaaattcaagaatgctcaagatatgtacggccctagaatccaa |
10097741 |
T |
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| Q |
399 |
actactttagtcactctataatatatctttaaccacatcactccaaaaacaacaaattttaaatttcccctgcagaatcattgcctagtatttaatcatt |
498 |
Q |
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| T |
10097742 |
actactttagtcactctataatatatctttaaccacatcactccaaaaacaacaaattttaaatttcccctgcagaatcattgcctagtatttaatcatt |
10097841 |
T |
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| Q |
499 |
gtaatattaatacatgctgtgagtacacgtcaatgtgatggtttgatgaatttgcattgctatattgatgatcaagta |
576 |
Q |
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| T |
10097842 |
gtaatattaatacttgctgtgagtacacgtcaatgtgatggtctgatgaatttgcattgctatattgatgatcaagta |
10097919 |
T |
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