View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1647_low_1 (Length: 263)
Name: NF1647_low_1
Description: NF1647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1647_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 18925375 - 18925130
Alignment:
| Q |
1 |
acacgatctcaattccgttgatgaaagcataagcctttgattgatttatggtgtttggaatgaaagttatatttaacttctcacttggtttcattttgag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18925375 |
acacgatctcaattccgttgatgaaagcataagcctttggttgatttatggtgtttggaatgaaagttatatttaacttctcagttggtttcattttgag |
18925276 |
T |
|
| Q |
101 |
gcagtactctttcgtgattgtcttgttatcgttttgaaaccaaagtgcggggttaaagtctttgagaagggtgacattgtttccaactacgacggtgaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
18925275 |
gcagtactctttcgtgattgtcttgttatcgttttgaagccaaagtgcggggttaaagtcattgagaagggtgacattggttccaactttgacggtgaag |
18925176 |
T |
|
| Q |
201 |
agggcgttataggtttcaaagttttgatacgatgttgggtaaaaat |
246 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18925175 |
agggcgtcgaaggtttcaaagttttgatacgatgttgggtaaaaat |
18925130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 4667403 - 4667648
Alignment:
| Q |
1 |
acacgatctcaattccgttgatgaaagcataagcctttgattgatttatggtgtttggaatgaaagttatatttaacttctcacttggtttcattttgag |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| ||| |||| ||| || | || ||||||||||||| | || ||||| | | |||| | | || |
|
|
| T |
4667403 |
acacaatctcaattccgttgatgaaagcaaaagcatttaattggtttgtgtttttgggaatgaaagttacgtctagtttctccccttgtttggtatggat |
4667502 |
T |
|
| Q |
101 |
gcagtactctttcgtgattgtcttgttatcgttttgaaaccaaagtgcggggttaaagtctttgagaagggtgacattgtttccaactacgacggtgaag |
200 |
Q |
| |
|
||| || ||||| ||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||||||| | ||| |||| ||| ||| |||||| |
|
|
| T |
4667503 |
gcaatattctttggtgattgtcttgttatcgtttggaagccaaagtgaagggctaaagtctttgagaagggtaaggttggttcctactttgactgtgaag |
4667602 |
T |
|
| Q |
201 |
agggcgttataggtttcaaagttttgatacgatgttgggtaaaaat |
246 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4667603 |
agagcgttggaggtttcaaagttttgatacgatgttgggtaaaaat |
4667648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 232
Target Start/End: Original strand, 4631451 - 4631626
Alignment:
| Q |
57 |
ggaatgaaagttatatttaacttctcacttggtttcattttgaggcagtactctttcgtgattgtcttgttatcgttttgaaaccaaagtgcggggttaa |
156 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||| |||| | ||| || ||||| |||||||||||| |||||||| || |||||| | ||| |||| |
|
|
| T |
4631451 |
ggaatgaaagttatgtttagcttctcatttggagcaatttgtatgcaatattctttggtgattgtcttgctatcgtttgaaagccaaagcgagggattaa |
4631550 |
T |
|
| Q |
157 |
agtctttgagaagggtgacattgtttccaactacgacggtgaagagggcgttataggtttcaaagttttgatacga |
232 |
Q |
| |
|
|||||||||||||||| | ||| |||| ||| ||| |||||||||||||| ||||||||| || ||||||||| |
|
|
| T |
4631551 |
agtctttgagaagggtaaggttggttcctactttgactgtgaagagggcgttggaggtttcaatgtgttgatacga |
4631626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 4711694 - 4711607
Alignment:
| Q |
12 |
attccgttgatgaaagcataa---gcctttgattgatttatggtgtttggaatgaaagttatatttaacttctcacttggtttcattt |
96 |
Q |
| |
|
|||||||| |||||||||||| | ||||| ||||||||| ||||||||||||||||||| ||| ||||||| ||||||| |||| |
|
|
| T |
4711694 |
attccgttaatgaaagcataataaggatttgaatgatttatgttgtttggaatgaaagttatgcttagcttctcatttggtttgattt |
4711607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 4637357 - 4637417
Alignment:
| Q |
36 |
tttgattgatttatggtgtttggaatgaaagttatatttaacttctcacttggtttcattt |
96 |
Q |
| |
|
|||||||| |||||| |||| |||||||||||||| |||||||| ||| ||||||| |||| |
|
|
| T |
4637357 |
tttgattggtttatgctgttaggaatgaaagttatgtttaacttttcatttggtttgattt |
4637417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 4696812 - 4696730
Alignment:
| Q |
12 |
attccgttgatgaaagcataa---gcctttgattgatttatggtgtttggaatgaaagttatatttaacttctcacttggttt |
91 |
Q |
| |
|
|||||||| |||||||||||| | ||||| || |||||| || | |||||||||||||| |||||||||||| ||||||| |
|
|
| T |
4696812 |
attccgttaatgaaagcataataaggatttgactggtttatgttgctgggaatgaaagttatgtttaacttctcatttggttt |
4696730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 16501 times since January 2019
Visitors: 3768