View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1647_low_2 (Length: 252)
Name: NF1647_low_2
Description: NF1647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1647_low_2 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 30264664 - 30264429
Alignment:
| Q |
13 |
agatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattgaattctatgatcat |
112 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30264664 |
agatggaaatatgaaatggaaaaaagtagaggtaaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattgaattctatgatcaa |
30264565 |
T |
|
| Q |
113 |
gattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30264564 |
gattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctg |
30264465 |
T |
|
| Q |
213 |
cttacaccataatattcaaacttcatcatgcacttg |
248 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
30264464 |
cttacaccataatattcaaacttcatcatgcacttg |
30264429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 30287524 - 30287759
Alignment:
| Q |
13 |
agatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattgaattctatgatcat |
112 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30287524 |
agatggaaatatgaaatggaaaaaagtagaggtaaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattgaattctatgatcaa |
30287623 |
T |
|
| Q |
113 |
gattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30287624 |
gattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctg |
30287723 |
T |
|
| Q |
213 |
cttacaccataatattcaaacttcatcatgcacttg |
248 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
30287724 |
cttacaccataatattcaaacttcatcatgcacttg |
30287759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 30271558 - 30271360
Alignment:
| Q |
13 |
agatggaaatatgaaatggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattgaattctatgatcat |
112 |
Q |
| |
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|||||| || |||||||||||||| |||||||| || || |||||||| | | |||||| | |||||||||| ||| ||||||||||| |||||||| |
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| T |
30271558 |
agatggcaaaatgaaatggaaaaaggtagaggtgaagcctgaagatcatatgcacgttccaatattccctaaaagtgaatcaattgaattgtatgatcaa |
30271459 |
T |
|
| Q |
113 |
gattttgatgactatgtgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgct |
211 |
Q |
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|||||||||| |||||||||||||| | || ||||| |||||| |||||||||| ||||||||||||||| | || || ||||||||||| |||||| |
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| T |
30271458 |
tattttgatgattatgtgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatacatttaattaaatatccaacaagaaatgct |
30271360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 211
Target Start/End: Original strand, 30280647 - 30280829
Alignment:
| Q |
29 |
tggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattgaattctatgatcatgattttgatgactatg |
128 |
Q |
| |
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||||||||| |||||| || || |||||||| | ||||||||| | |||||||||| ||| ||||||||||| |||||||| |||||||||| |||| |
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| T |
30280647 |
tggaaaaaaatagaggcgaagcctgaagatcatatgaaggttccaatattccctaaaagtgaatcaattgaattgtatgatcaatattttgatgattatg |
30280746 |
T |
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| Q |
129 |
tgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgct |
211 |
Q |
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|||||||||| | || ||||| |||||| |||||||||| ||||||||||| ||| | || || |||||||||||||||||| |
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| T |
30280747 |
tgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatgcatttaattaaatatccaacaagcaatgct |
30280829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 211
Target Start/End: Complemental strand, 30304609 - 30304427
Alignment:
| Q |
29 |
tggaaaaaagtagaggttaatccaaaagatcattttaaggttccagtgttccctaaaaatgagtcaattgaattctatgatcatgattttgatgactatg |
128 |
Q |
| |
|
||||||||| |||||| || || |||||||| | ||||||||| | |||||||||| ||| ||||||||||| |||||||| |||||||||| |||| |
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| T |
30304609 |
tggaaaaaaatagaggcgaagcctgaagatcatatgaaggttccaatattccctaaaagtgaatcaattgaattgtatgatcaatattttgatgattatg |
30304510 |
T |
|
| Q |
129 |
tgtcaaagatattaatagaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgct |
211 |
Q |
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|||||||||| | || ||||| |||||| |||||||||| ||||||||||| ||| | || || |||||||||||||||||| |
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| T |
30304509 |
tgtcaaagattatgatggaaagaacaccacaagacaaaccactttgggaaatgcatttaattaaatatccaacaagcaatgct |
30304427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 30048723 - 30048627
Alignment:
| Q |
152 |
acaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttg |
248 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
30048723 |
acaccacaagataaaccactttgggaaattcatgttatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttcatcatggacttg |
30048627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 152 - 248
Target Start/End: Complemental strand, 30063064 - 30062968
Alignment:
| Q |
152 |
acaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttg |
248 |
Q |
| |
|
|||||| |||| ||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
30063064 |
acaccacaagataaaccactttgggaaattcatgttatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttcatcatggacttg |
30062968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 146 - 248
Target Start/End: Complemental strand, 30032483 - 30032381
Alignment:
| Q |
146 |
gaaaggacaccaaaagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcac |
245 |
Q |
| |
|
||||| |||||| |||| ||||| ||||||||||| ||| ||||||| |||||||||| ||||| |||| ||||||||||||||||||||||||||||| |
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|
| T |
30032483 |
gaaagaacaccacaagataaaccactttgggaaattcatattatcaattatccaacaaccaatgaagcttgcaccataatattcaaacttcatcatgcac |
30032384 |
T |
|
| Q |
246 |
ttg |
248 |
Q |
| |
|
||| |
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|
| T |
30032383 |
ttg |
30032381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 30228850 - 30228766
Alignment:
| Q |
164 |
aaacccctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttg |
248 |
Q |
| |
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||||| ||||||||||| ||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
30228850 |
aaaccactttgggaaattcatattatcaattatccaacaaccaatgctgcttgcaccataatattcaaacttaatcatgcacttg |
30228766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 30220209 - 30220261
Alignment:
| Q |
159 |
aagacaaacccctttgggaaatacatgttatcaagtatccaacaagcaatgct |
211 |
Q |
| |
|
|||| ||||||||||||||||| ||| | || || |||||||||||||||||| |
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|
| T |
30220209 |
aagataaacccctttgggaaattcatttgattaaatatccaacaagcaatgct |
30220261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 248
Target Start/End: Complemental strand, 79679 - 79601
Alignment:
| Q |
170 |
ctttgggaaatacatgttatcaagtatccaacaagcaatgctgcttacaccataatattcaaacttcatcatgcacttg |
248 |
Q |
| |
|
|||||||| |||||| |||| || |||||||||| ||||| ||| ||| || |||||||||||||||||||||||| |
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|
| T |
79679 |
ctttgggagatacatattattaaatatccaacaaaaaatgcagctggtaccttagtattcaaacttcatcatgcacttg |
79601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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