View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1647_low_3 (Length: 239)
Name: NF1647_low_3
Description: NF1647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1647_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 38850057 - 38849836
Alignment:
| Q |
1 |
ttcttgacccacggatgaagtttacaaccttggcttattgttattcaaaactggatgcatcaacctgtgaaaggaagctacagcaagtaaagagaaagtt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38850057 |
ttcttgacccacggatgaagtttacaaccttggcttattgttattcaaaactggatgcatcaacctgtgaaaggaagctacagcaagtaaagagaaagtt |
38849958 |
T |
|
| Q |
101 |
gtgcatgctatttgagaagtattctggcaacagcactactgctggggttcaaagaactattaaggagaatcaggaccaatcttctagcatgccattacag |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38849957 |
gtgcatgctatttgagaagcattctggcaacagcactactgctggggttcaaagaactattaaggagaatcaggaccaatcttctagcatgccattacaa |
38849858 |
T |
|
| Q |
201 |
aagaaattaaagtctttatctc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
38849857 |
aagaaattaaagtctttatctc |
38849836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38317288 - 38317500
Alignment:
| Q |
1 |
ttcttgacccacggatgaagtttacaaccttggcttattgttattcaaaactggatgcatcaacctgtgaaaggaagctacagcaagtaaagagaaagtt |
100 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||||||||| |||||||| ||| |||||||||| || |||| | || | ||||||||||||||| |
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| T |
38317288 |
ttcttgacccacggatgaagttttcgacgttggcttattgttactcaaaacttgatccatcaacctgcgagcagaagttgcaactagtaaagagaaagtt |
38317387 |
T |
|
| Q |
101 |
gtgcatgctatttgagaagtattctggcaacagcactactgctggggttcaaagaactattaaggagaatcaggaccaatcttctagcatgccattacag |
200 |
Q |
| |
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|| |||||||||||| ||||||||| |||| |||||| || |||| | |||||||| | ||||||||||||||||| ||||||||| || |
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| T |
38317388 |
gtacatgctatttgacaagtattctagcaaaagcacttcttctggcctaaaaagaact---------actcaggaccaatcttctaccatgccattgcaa |
38317478 |
T |
|
| Q |
201 |
aagaaattaaagtctttatctc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
38317479 |
aagaaattaaagtctttatctc |
38317500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38321383 - 38321595
Alignment:
| Q |
1 |
ttcttgacccacggatgaagtttacaaccttggcttattgttattcaaaactggatgcatcaacctgtgaaaggaagctacagcaagtaaagagaaagtt |
100 |
Q |
| |
|
||||||||||||||||||||||| | || |||||| ||||||| |||||||| |||| || |||||||||||||| | || |||||||||| ||||| |
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| T |
38321383 |
ttcttgacccacggatgaagttttctacattggctcattgttactcaaaacttgatgtttcggcctgtgaaaggaagttgcaagaagtaaagagtaagtt |
38321482 |
T |
|
| Q |
101 |
gtgcatgctatttgagaagtattctggcaacagcactactgctggggttcaaagaactattaaggagaatcaggaccaatcttctagcatgccattacag |
200 |
Q |
| |
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|| |||||||||||| ||||||||| |||| || | | || ||||||| ||||||||||| ||||||| ||||||||||||||||||| || |
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| T |
38321483 |
gtacatgctatttgacaagtattctagcaaaagtatttcttctggggtgcaaagaactat---------tcaggacgaatcttctagcatgccattgcaa |
38321573 |
T |
|
| Q |
201 |
aagaaattaaagtctttatctc |
222 |
Q |
| |
|
|||||||| ||||||| ||||| |
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|
| T |
38321574 |
aagaaattgaagtcttcatctc |
38321595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38309285 - 38309497
Alignment:
| Q |
1 |
ttcttgacccacggatgaagtttacaaccttggcttattgttattcaaaactggatgcatcaacctgtgaaaggaagctacagcaagtaaagagaaagtt |
100 |
Q |
| |
|
||||||||||| |||| ||| || | || |||||||||||||| |||||||| ||||||||||||| ||||||||| | |||||||||||||| ||||| |
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|
| T |
38309285 |
ttcttgacccaaggataaagctttccacattggcttattgttactcaaaacttaatgcatcaacctgcgaaaggaagttgcagcaagtaaagagcaagtt |
38309384 |
T |
|
| Q |
101 |
gtgcatgctatttgagaagtattctggcaacagcactactgctggggttcaaagaactattaaggagaatcaggaccaatcttctagcatgccattacag |
200 |
Q |
| |
|
|| |||||||||| | ||| ||||| |||| || ||| || |||| || |||||||| || |||||||||||||||||| ||||||| || |
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| T |
38309385 |
gtacatgctatttcacaagaattcttgcaaaagtacttcttctggcgtgcaaagaacaat---------tcaggaccaatcttctagtgtgccattgcaa |
38309475 |
T |
|
| Q |
201 |
aagaaattaaagtctttatctc |
222 |
Q |
| |
|
||||| |||||||||||||||| |
|
|
| T |
38309476 |
aagaagttaaagtctttatctc |
38309497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 38300638 - 38300849
Alignment:
| Q |
1 |
ttcttgacccacggatgaagtttacaaccttggcttattgttattcaaaactggatgcatcaacctgtgaaaggaagctacagcaagtaaagagaaagtt |
100 |
Q |
| |
|
||||||||||| |||| ||| || |||| |||||| ||||||| |||||||| ||||||||||| ||||||||||| | || ||||||||||| ||||| |
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|
| T |
38300638 |
ttcttgacccaaggattaagctttcaacattggctaattgttactcaaaacttgatgcatcaacacgtgaaaggaagttgcaacaagtaaagagcaagtt |
38300737 |
T |
|
| Q |
101 |
gtgcatgctatttgagaagtattctggcaacagcactactgctggggttcaaagaactattaaggagaatcaggaccaatcttctagcatgccattacag |
200 |
Q |
| |
|
|| |||||||||||| ||||||||| |||| || ||| || || | || ||||||| ||| |||||||||||||||||||||||||| || |
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| T |
38300738 |
gtacatgctatttgacaagtattctagcaaaagtactccttcttgcgtgcaaagaattat---------ccaggaccaatcttctagcatgccatttcaa |
38300828 |
T |
|
| Q |
201 |
aagaaattaaagtctttatct |
221 |
Q |
| |
|
|||| ||||| ||||||||| |
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| T |
38300829 |
gagaagttaaactctttatct |
38300849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 38326133 - 38326257
Alignment:
| Q |
1 |
ttcttgacccacggatgaagtttacaaccttggcttattgttattcaaaactggatgcatcaacctgtgaaaggaagctacagcaagtaaagagaaagtt |
100 |
Q |
| |
|
|||||||||||||||| || ||| |||| |||||||||||||| |||||||| |||||||||||||||||||||||| | || ||||||| || ||||| |
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|
| T |
38326133 |
ttcttgacccacggattaaattttcaacattggcttattgttactcaaaacttgatgcatcaacctgtgaaaggaagttgcaacaagtaaggacgaagtt |
38326232 |
T |
|
| Q |
101 |
gtgcatgctatttgagaagtattct |
125 |
Q |
| |
|
|| ||||||||||| ||||||||| |
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|
| T |
38326233 |
gtacatgctatttggcaagtattct |
38326257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 38306540 - 38306664
Alignment:
| Q |
6 |
gacccacggatgaagtttacaaccttggcttattgttattcaaaactggatgcatcaacctgtgaaaggaagctacagcaagtaaagagaaagttgtgca |
105 |
Q |
| |
|
|||||||||||||| || ||| |||||| ||||||| |||||||| ||| ||||||| |||||| ||||| | || ||||||||| |||||||| || |
|
|
| T |
38306540 |
gacccacggatgaaattctcaaggttggctgattgttactcaaaactcgatccatcaacttgtgaacggaagttgcaaaaagtaaagacaaagttgtaca |
38306639 |
T |
|
| Q |
106 |
tgctatttgagaagtattctggcaa |
130 |
Q |
| |
|
|||||||||| ||||||||| |||| |
|
|
| T |
38306640 |
tgctatttgacaagtattctagcaa |
38306664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 38313877 - 38314037
Alignment:
| Q |
1 |
ttcttgacccacggatgaagtttacaaccttggcttattgttattcaaaactggatgcatcaacctgtgaaaggaagctacagcaagtaaagagaaagtt |
100 |
Q |
| |
|
||||||||||||||||||| ||| ||| |||||| |||||| |||||||| ||| ||||||| |||||| ||||| | || ||||||||| |||||| |
|
|
| T |
38313877 |
ttcttgacccacggatgaaattttcaagattggctgcttgttactcaaaactagatccatcaacttgtgaacggaagttgcaaaaagtaaagacaaagtt |
38313976 |
T |
|
| Q |
101 |
gtgcatgctatttgagaagtattctggcaacagcactactgctggggttcaaagaactatt |
161 |
Q |
| |
|
|| ||||||||||| ||||| ||| |||| || ||| || || |||| |||| ||||||| |
|
|
| T |
38313977 |
gtacatgctatttgccaagtactctagcaaaagtacttcttctagggtgcaaacaactatt |
38314037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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