View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681-Insertion-1 (Length: 351)
Name: NF1681-Insertion-1
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681-Insertion-1 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 159 - 351
Target Start/End: Original strand, 20716613 - 20716805
Alignment:
| Q |
159 |
aggagttttccaaatcagccatcatgttaagcatgtgaaaatacaccttctaggatacaattacggtgcttaacaattatcaagaattacttggttccct |
258 |
Q |
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| T |
20716613 |
aggagttttccaaatcagccatcatgttaagcatgtgaaaatacaccttctaggatacaatcacggtgcttaacaattatcaagaattacttggttccct |
20716712 |
T |
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| Q |
259 |
tcatacattaacaacccacgaaattagcacaaattattttcaatagataaaagtaaattaacattctaaatcagccacaatttttattcctga |
351 |
Q |
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| T |
20716713 |
tcatacattaacaacccacgaaattagcacaaattattttcaatagataaaagtaaattaacattctaaatcagccacaatttttattcctga |
20716805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 20716613 - 20716756
Alignment:
| Q |
8 |
aggagttttccaaatcagccatcatgttaagcatgtgaaaatacaccttctaggatacaattacggtgcttaacaattatcaagaattacttggttccct |
107 |
Q |
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| T |
20716613 |
aggagttttccaaatcagccatcatgttaagcatgtgaaaatacaccttctaggatacaatcacggtgcttaacaattatcaagaattacttggttccct |
20716712 |
T |
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| Q |
108 |
tcatacattaacaacccacgaaattagcacaaattattttcaat |
151 |
Q |
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| T |
20716713 |
tcatacattaacaacccacgaaattagcacaaattattttcaat |
20716756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 35294491 - 35294420
Alignment:
| Q |
247 |
acttggttcccttcatacattaacaacccacgaaattagcacaaattattttcaatagataaaagtaaatta |
318 |
Q |
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| T |
35294491 |
actttgttcccttaattcattaatatcccacgaaattagaacaaattattttcaacagataaaagaaaatta |
35294420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 35294491 - 35294437
Alignment:
| Q |
96 |
acttggttcccttcatacattaacaacccacgaaattagcacaaattattttcaa |
150 |
Q |
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| T |
35294491 |
actttgttcccttaattcattaatatcccacgaaattagaacaaattattttcaa |
35294437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 624540 - 624568
Alignment:
| Q |
27 |
catcatgttaagcatgtgaaaatacacct |
55 |
Q |
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| T |
624540 |
catcatgttaagcatgtgaaaatacacct |
624568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 206
Target Start/End: Original strand, 624540 - 624568
Alignment:
| Q |
178 |
catcatgttaagcatgtgaaaatacacct |
206 |
Q |
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| T |
624540 |
catcatgttaagcatgtgaaaatacacct |
624568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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