View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1681-Insertion-10 (Length: 324)
Name: NF1681-Insertion-10
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681-Insertion-10 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 7 - 324
Target Start/End: Original strand, 6630009 - 6630327
Alignment:
| Q |
7 |
aatcacaaccctcatgcgctaagagtttgtcaatcagcgttggcctatcttcattaaatgacgcctcaatattcatctccatgttgaaaatcctctccat |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6630009 |
aatcacaaccctcatgcgttaagagtttgttaatcagcgttggcctatcttcattaaatgacgcctcaatattcatctccatgttgaaaatcctctccat |
6630108 |
T |
|
| Q |
107 |
ctcaactctattggtgtcaattttagaattaggatatttacccaaaacaccat-aaaaactgcaaacctctaacccccaaaatattctcttagtacctct |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6630109 |
ctcaactctattggtgtcaattttagaattaggatatttacccaaaacaccataaaaaaatgcaaacctctaacccccaaaatattctcttaatacctct |
6630208 |
T |
|
| Q |
206 |
cttttaaaacggatcaagagagtnnnnnnntgaagaaatttgtttaaaatcaattgtcaacattttatattaatgaatagatttctttcaaatgaagaaa |
305 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
6630209 |
cttttaaaacggatcgagagagtaaaaaaatgaagaaatttgtttaaaatcaatcgtcaacattttatattaatgaatagatttcctttaaatgaagaaa |
6630308 |
T |
|
| Q |
306 |
ttaccctttgatgaattga |
324 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
6630309 |
ttaccctttgatgaattga |
6630327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 7 - 323
Target Start/End: Original strand, 6803569 - 6803886
Alignment:
| Q |
7 |
aatcacaaccctcatgcgctaagagtttgtcaatcagcgttggcctatcttcattaaatgacgcctcaatattcatctccatgttgaaaatcctctccat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6803569 |
aatcacaaccctcatgcgctaagagtttgtcaatcagcgttggcctatcttcattaaatgacacctcaatattcattcccatgttgaaaatcctctccat |
6803668 |
T |
|
| Q |
107 |
ctcaactctattggtgtcaattttagaattaggatatttacccaaaacaccat-aaaaactgcaaacctctaacccccaaaatattctcttagtacctct |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6803669 |
ctcaactctattggtgtcaattttagaattaggatatttacccaaaacaccataaaaaaatgcaaacctctaacccccaaaatattctcttaatacctct |
6803768 |
T |
|
| Q |
206 |
cttttaaaacggatcaagagagtnnnnnnntgaagaaatttgtttaaaatcaattgtcaacattttatattaatgaatagatttctttcaaatgaagaaa |
305 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6803769 |
cttttaaaacggatcgagagagtaaaaaaatgaagaaatttgtttaaaatcaatcgccaacattttatattaatgaatagatttccatcaaatgaagaaa |
6803868 |
T |
|
| Q |
306 |
ttaccctttgatgaattg |
323 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
6803869 |
ttaccctttgatgaattg |
6803886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 6809621 - 6809705
Alignment:
| Q |
133 |
aattaggatatttacccaaaacaccataaaaac--tgcaaacctctaacccccaaaatattctcttagtacctctcttttaaaac |
215 |
Q |
| |
|
|||||||| ||| ||| ||||||||||||||| |||||| |||||||||||||||| | |||||| || ||||||||||||| |
|
|
| T |
6809621 |
aattaggacattgaccgaaaacaccataaaaaaaatgcaaagctctaacccccaaaatttcctcttaacacgtctcttttaaaac |
6809705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 13214 times since January 2019
Visitors: 8270