View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1681-Insertion-14 (Length: 399)
Name: NF1681-Insertion-14
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681-Insertion-14 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 8 - 399
Target Start/End: Original strand, 47061821 - 47062212
Alignment:
| Q |
8 |
caaattatccattgtaatataaatcctcaaaatatacttatggatgaagcatggaatgcaaaaatatctgattttggattggcaagactttcaaagaggg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47061821 |
caaattatccattgtaatataaatcctcaaaatatacttatggatgaagcatggaatgcaaaaatatctgattttggattggcaagactttcaaagaggg |
47061920 |
T |
|
| Q |
108 |
gtcattcaagaactaaaatagaggatgatggcacagtcaagtatttcgcacctgaacggcagaaggaggatgcatcagtatcggtaaaagctgacattta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47061921 |
gtcattcaagaactaaaatagaggatgatggcacagtcaagtatttggcacctgaacggcagaaggaggatgcatcagtatcggtaaaagctgacattta |
47062020 |
T |
|
| Q |
208 |
cagttttggtgtggtattattggaaattatttgccgcagaagaagtatagagatgaataatattcactcgcccggtgaaattcttctttccagttgggca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47062021 |
cagttttggtgtggtattattggaaattatttgccgcagaagaagtatagagatgaataatattcactcgcccggtgaaattcttctttccagttgggca |
47062120 |
T |
|
| Q |
308 |
tatcaatgttttgaagcagggcagttaaacaagcttatcagacatgatgagaaagatgtggattggaagatattggaaagaatggtgaaagt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47062121 |
tatcaatgttttgaagcagggcagttaaacaagcttatcagacatgatgagaaagatgtggattggaagatattggaaagaatggtgaaagt |
47062212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 14 - 399
Target Start/End: Complemental strand, 47079930 - 47079548
Alignment:
| Q |
14 |
atccattgtaatataaatcctcaaaatatacttatggatgaagcatggaatgcaaaaatatctgattttggattggcaagactttcaaagaggggtcatt |
113 |
Q |
| |
|
|||||||| ||||||||||||| ||| |||||||| || |||||||||| ||||||||| ||||||||||||| ||||| | ||||||||||| |||| |
|
|
| T |
47079930 |
atccattgcaatataaatcctcgaaaaatacttatagacgaagcatggaccgcaaaaataactgattttggattcgcaaggttatcaaagaggggccatt |
47079831 |
T |
|
| Q |
114 |
caagaactaaaatagaggatgatggcacagtcaagtatttcgcacctgaacggcagaaggaggatgcatcagtatcggtaaaagctgacatttacagttt |
213 |
Q |
| |
|
||||||| ||||||| ||||| | ||| || ||| || ||||||||| ||||||||||||| ||||||||||| |||||||||||| |||| ||||| |
|
|
| T |
47079830 |
caagaaccaaaataggggatggt---acaagcaggtacttggcacctgaatggcagaaggaggacgcatcagtatcagtaaaagctgacgtttatagttt |
47079734 |
T |
|
| Q |
214 |
tggtgtggtattattggaaattatttgccgcagaagaagtatagagatgaataatattcactcgcccggtgaaattcttctttccagttgggcatatcaa |
313 |
Q |
| |
|
||| |||||| ||||||| ||||||||||||| |||||||||||| |||||||||||| |||| ||| |||||| | |||||||| |||| |||||| |
|
|
| T |
47079733 |
tggggtggtactattggagattatttgccgcaaaagaagtatagatatgaataatatttcctcggccgatgaaatccctctttccacctgggtgtatcaa |
47079634 |
T |
|
| Q |
314 |
tgttttgaagcagggcagttaaacaagcttatcagacatgatgagaaagatgtggattggaagatattggaaagaatggtgaaagt |
399 |
Q |
| |
|
||||||| | |||| || || |||||||| |||| |||| |||| || ||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47079633 |
tgttttgcatcaggacaattgaacaagctaatcacacataatgaaaatgatatggattggaagatattggaaagaatggtgaaagt |
47079548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 338 - 396
Target Start/End: Complemental strand, 47052424 - 47052366
Alignment:
| Q |
338 |
aagcttatcagacatgatgagaaagatgtggattggaagatattggaaagaatggtgaa |
396 |
Q |
| |
|
|||||| |||||||| |||||||| | |||||||||||| |||||||||||||| |||| |
|
|
| T |
47052424 |
aagcttttcagacataatgagaaatacgtggattggaaggtattggaaagaatgttgaa |
47052366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 3080486 - 3080518
Alignment:
| Q |
61 |
gaatgcaaaaatatctgattttggattggcaag |
93 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
3080486 |
gaatccaaaaatatctgattttggattggcaag |
3080518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 3094923 - 3094955
Alignment:
| Q |
61 |
gaatgcaaaaatatctgattttggattggcaag |
93 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
3094923 |
gaatccaaaaatatctgattttggattggcaag |
3094955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 4548045 - 4548013
Alignment:
| Q |
61 |
gaatgcaaaaatatctgattttggattggcaag |
93 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
4548045 |
gaatccaaaaatatctgattttggattggcaag |
4548013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 7999 times since January 2019
Visitors: 7737