View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681-Insertion-16 (Length: 642)
Name: NF1681-Insertion-16
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681-Insertion-16 |
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Alignment Details
Target: chr8 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 5 - 606
Target Start/End: Original strand, 18600559 - 18601174
Alignment:
| Q |
5 |
acaagaaagtcccaccaactaagcaacccatgaagaacatggaagctggaaggcctgtgatgatagagctctcacactgcatggcccattcagatatgat |
104 |
Q |
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| T |
18600559 |
acaagaaaagcccaccaactaagcaacccatgaagaacatggaagctggaagacctgtgatgatagagctctcacactgcatggcccattcagatatgat |
18600658 |
T |
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| Q |
105 |
ggaggcttgtggtggcccatcccaagcccatgagcctttgggaaacttacacacatcattaaatgatggtgtcgagtagcagccattcaaaatgtcaatg |
204 |
Q |
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| T |
18600659 |
ggaggcctgtggtggcccatcccaagcccatgagcctttgggaaacttacacacatcattaaatgatggtgtcgagtagcagccattcaaaatgtcaatg |
18600758 |
T |
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| Q |
205 |
ttttcaccggtgcagtgccatgatggaactgcatcggtgaaaacagtgatgaatgtttgttgggcatcaaagatccaagcaaaggatataagaacagctt |
304 |
Q |
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| T |
18600759 |
ttttcaccggtgcagtgccatgatggaacttcatcggtgaaaacagtgatgaatgtttgttgggcatcaaagatccaagcaaaggatataagaagagctt |
18600858 |
T |
|
| Q |
305 |
gaaagaattgactccaattgagttcacctatgcacttttctattgtgaagccaagagaatgaaggtgtttatttggtgatgtttttgtgtcactagtgct |
404 |
Q |
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| T |
18600859 |
gaaagaattgactccaattgagttcacctatgcacttttctattgtgaagccaagagaatgaaggtgtttatttggtgatgtttttgtgtcactggtgtt |
18600958 |
T |
|
| Q |
405 |
attgggttggctcagaagaggagttggatcacccatatcaagagtctatgtagtttttctatagaattcttgtcgtaatgactacctattctatac---- |
500 |
Q |
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| T |
18600959 |
attgggttggctcagaagaggagttggatcacccatatcaagagtc--tgtagtttttctatagaattcttgttgtaatgactacctattctatactata |
18601056 |
T |
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| Q |
501 |
----------tatatatggggaatatgcatgcatagccaactatagtatcatctagatattctta----gtagtaattgaattttataattatttttcat |
586 |
Q |
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| T |
18601057 |
tatatatatatatatatggggaatatgcatgcata-actactatagtatcatctagatattcttagtacgtagtaattgaattttataattatttttcat |
18601155 |
T |
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| Q |
587 |
ataaataacaccctcatgtc |
606 |
Q |
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| T |
18601156 |
a-aaataacaccctcatgtc |
18601174 |
T |
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