View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681-Insertion-2 (Length: 373)
Name: NF1681-Insertion-2
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 8 - 370
Target Start/End: Original strand, 20716613 - 20716975
Alignment:
| Q |
8 |
aggagttttccaaatcagccatcatgttaagcatgtgaaaatacaccttctaggatacaattacggtgcttaacaattatcaagaattacttggttccct |
107 |
Q |
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| T |
20716613 |
aggagttttccaaatcagccatcatgttaagcatgtgaaaatacaccttctaggatacaatcacggtgcttaacaattatcaagaattacttggttccct |
20716712 |
T |
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| Q |
108 |
tcatacattaacaacccacgaaattagcacaaattattttcaatagataaaagtaaattaacattctaaatcagccacaatttttattcctgattttgtt |
207 |
Q |
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| T |
20716713 |
tcatacattaacaacccacgaaattagcacaaattattttcaatagataaaagtaaattaacattctaaatcagccacaatttttattcctgattttgtt |
20716812 |
T |
|
| Q |
208 |
tgcatcatttcatcagagcactcgggcacaatgtgtgatggcagtgcatccacggcgataagggttaacctgatctctgtggttgcaatcgtagtatgat |
307 |
Q |
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| T |
20716813 |
tgcatcatttcatcagagcactcgggcacaatgtgtgatggcagtgcatccacggcgataagggttaacctgatctctgtggttgcaatcgtagtatgat |
20716912 |
T |
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| Q |
308 |
tgtcccttaagaccacatgggatactatcagccagaagggcatcatagctaatgtatcttctt |
370 |
Q |
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| T |
20716913 |
tgtcccttaagaccacatgggatactatcagccagaagggcatcatagctaatgtatcttctt |
20716975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 187 - 371
Target Start/End: Complemental strand, 35294291 - 35294107
Alignment:
| Q |
187 |
atttttattcctgattttgtttgcatcatttcatcagagcactcgggcacaatgtgtgatggcagtgcatccacggcgataagggttaacctgatctctg |
286 |
Q |
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| T |
35294291 |
atttttgttcctgattttgtttgcaccatttaatcagagtgttctggcacaatgtgtgatggcagtgcaaccacggcggtaagggttagcctgacctcta |
35294192 |
T |
|
| Q |
287 |
tggttgcaatcgtagtatgattgtcccttaagaccacatgggatactatcagccagaagggcatcatagctaatgtatcttcttt |
371 |
Q |
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| T |
35294191 |
gcgttgcaatcgtagtaagattgtcccttttgaccacatgggatattattagccttaagggcaccatagctaatgtatcttcttt |
35294107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 35294491 - 35294420
Alignment:
| Q |
96 |
acttggttcccttcatacattaacaacccacgaaattagcacaaattattttcaatagataaaagtaaatta |
167 |
Q |
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| T |
35294491 |
actttgttcccttaattcattaatatcccacgaaattagaacaaattattttcaacagataaaagaaaatta |
35294420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 624540 - 624568
Alignment:
| Q |
27 |
catcatgttaagcatgtgaaaatacacct |
55 |
Q |
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| T |
624540 |
catcatgttaagcatgtgaaaatacacct |
624568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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