View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1681-Insertion-3 (Length: 345)
Name: NF1681-Insertion-3
Description: NF1681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1681-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 343
Target Start/End: Complemental strand, 45747173 - 45746838
Alignment:
| Q |
8 |
ctaagcatactagtataaattacaatcatcaaaacaacaaaatgtgaatgttcagcaagataatagacttaacttcctcctcctatcctccaacacaacc |
107 |
Q |
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| T |
45747173 |
ctaagcatactagtataaattacaatcatcaaaacaacaaaatgtgaatgttcagcaagataatatacttaacttcctcctcctatcctccaacacaacc |
45747074 |
T |
|
| Q |
108 |
ctctttgattcccccatcaattcaaagccccttttcgcggcatctttgttcagcccagccaaacccacagaattatcacaacaaaccatttcactcaaag |
207 |
Q |
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| T |
45747073 |
ctctttgattcccccatcaattcaaagccccttttcgcggcatctttgttcagcccagccaaacccacagaattatcacaacaaaccatttcactcaaag |
45746974 |
T |
|
| Q |
208 |
ccaaacttgaattatcaacgtcatcttcaacttttccagatttcttcttggtaactaattctttcttagcagaaccacggtttctaatagtagcaccctt |
307 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45746973 |
ccaaacttgaattatcaacatcatcttcaacttttccagatttcttcttggtaactaattctttcttagcagaaccacggtttctaatagtagcatcctt |
45746874 |
T |
|
| Q |
308 |
cttagaactcttcggagttttcccattaatttttcc |
343 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||| |
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| T |
45746873 |
cttagaactctttggagttttcccattaatttttcc |
45746838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 55 - 342
Target Start/End: Complemental strand, 45735877 - 45735589
Alignment:
| Q |
55 |
atgttcagcaagataatagacttaacttcctcctcctatcctccaacacaaccctctttgattcccccatcaattcaaagccccttttcgcggcatcttt |
154 |
Q |
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||||||| ||||| |||| ||| || |||||| ||| ||| ||| |||||| ||||||||||||||||||||||| |||||| |||| || ||||||| |
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| T |
45735877 |
atgttcaacaagagaatatactgaaattcctcgacctgtcccccagcacaactctctttgattcccccatcaattccaagcccttttttgcatcatcttt |
45735778 |
T |
|
| Q |
155 |
gttcagcccagccaaacccacagaattatcacaacaaaccatttcactcaaagccaaacttgaattatcaacgtcatcttcaacttttccagatttcttc |
254 |
Q |
| |
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|||| || |||||||||| ||| |||||||| ||| ||||||| |||||||||||||||| ||||||||||||||| ||| ||||||||||||||| || |
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| T |
45735777 |
gttcggctcagccaaaccaacaaaattatcaaaacgaaccattccactcaaagccaaactcgaattatcaacgtcactttccacttttccagatttcctc |
45735678 |
T |
|
| Q |
255 |
ttggtaactaattctttcttagcagaaccac-ggtttctaatagtagcacccttcttagaactcttcggagttttcccattaatttttc |
342 |
Q |
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|||||||||||||||||||| |||||||||| | ||| |||||||||| ||||||| |||||||| |||||||||||||| |||||| |
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| T |
45735677 |
ttggtaactaattctttctttgcagaaccactgttttttaatagtagcgtccttcttcgaactctttagagttttcccattagtttttc |
45735589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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